GgaINT1001356 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:613963-614805:-
Coord C1 exon
chrLGE64:614476-614805
Coord A exon
chrLGE64:614281-614475
Coord C2 exon
chrLGE64:613963-614280
Length
195 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATTTTCAGACTCACAATTAGAGA
3' ss Score
-0.5
Exon sequences
Seq C1 exon
TGACAGACACCTCAAAACCCAACTTCCTGCGGCTAGTGAGTGGCCCCAACCGCTGTGCTGGCAGAGTGGAGGTGCTGCATGATGGGCAGTGGGGCACAGTGTGCGATGATGGCTGGAACCTCCAGGCTGCCACTGTGGTGTGTCGGCAGCTGAACTGCGGCAGGGCTGAGTCAGCCCCCAGCGGTGCTCGCTTTGGGCAAGGCACTGGGCGTATCTGGCTGGATGACGTGAACTGTGCTGGGACTGAGGATGCCCTTCACCAGTGTCGAGCCCGTCCATGGGGACTGCATAACTGCAACCACAGAGAAGATGCTGGCGTGGTTTGCTCAG
Seq A exon
GTCAGTTGAGTTCTGCAAAACAGGGCACCGCTGGGGTCAAGTTGGTCATGGGGTCTGTCCTGAATCTTACTGCCTTTATGGTGATGCTGCAGCAGGACAGTCCTGGATCTGTGCATTTTTGAGGGGTTGAGAGAGGAGTGCAGGATTTTCTTGGAGGGTTTATCACCCCTCTCACATTTTCAGACTCACAATTAG
Seq C2 exon
AGATTACAGCCAAAGTGCGGCTGGTGGATGGTCCACACCGCTGTGCCGGGAGGTTGGAGGTGTTTCAGAACGAGAGATGGGGGACCGTGTGTGGCAACGGCTGGGACATGAATGACGCCATAGTGGTGTGCCGGCAGCTGGGCTGTGGCATTGCTCTCTCGGCTCCTGTCCAGGCTCACTTCGGCCAAGGGTCAGATCCCATCTGGATGAACAGAGTGTCCTGCATCGGGACAGAAAGTTCCATTTCAGAATGCTTGTCGTCTCCATGGGGAATCCAACTGTGCACCCACATGGATGATGCCGGTGTGGAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGATGCTGGCGTGGTTT
R:
CCGATGCAGGACACTCTGTTC
Band lengths:
256-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]