GgaINT1001374 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24099118-24099480:+
Coord C1 exon
chr1:24099118-24099191
Coord A exon
chr1:24099192-24099386
Coord C2 exon
chr1:24099387-24099480
Length
195 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
GGTCTGTGTTTTTCTTTAAGACT
3' ss Score
6.15
Exon sequences
Seq C1 exon
AAACTGCAAGACCTTCTGTTAGCAACTTCTGGAACCAATACTACTATAAAACAACTGGAAGAACATGTACAACG
Seq A exon
GTAAGAAAATAGCAGAATGAAGCAAGGTTTTGCTTTCTGGGATTATTTGAAAACATCAGGATTGCCTTGTTTCATCATCATGGTAATACATTATTTTGAAAGAAGCTCTTGCTTTAAATTGCGTTATTTCACACTGTTCTTTTACAATTTGTGCTATTACGGGTTTCTCTAATAAGGTCTGTGTTTTTCTTTAAG
Seq C2 exon
ACTTGAAATTGAAAATGCCAGATTGGAAGCTGCAGCCAAACAACAAACCAATAGAATTGAAGCTCTTCAGAAGGACCTGCAAGCCTCAACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.469
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAGACCTTCTGTTAGCA
R:
GTTGAGGCTTGCAGGTCCTTC
Band lengths:
162-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]