HsaINT0008656 @ hg38
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27028852-27029356:-
Coord C1 exon
chr10:27029286-27029356
Coord A exon
chr10:27028946-27029285
Coord C2 exon
chr10:27028852-27028945
Length
340 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TTTTAAAATATACATTTCAGGCT
3' ss Score
5.68
Exon sequences
Seq C1 exon
TTGCAAGAAGCACAGGATCGACATACAGAAGCTGTCAGATGTGCTGAGAAGATGCAAGATCACAAGCAAAA
Seq A exon
GTAAAATTTAAAGCAGCACACAGAAAAACATGATTATTTATAGAGCAAATAAGCAGTGTAGTATGAGAATTATATCAGCTATGATCATAAGTACATCTGTGTGAAGTCAAGGAAAAATTTCAGCATTAAGCAATTTTGAAATGCGGATTTTTTTATATTATCCTAGAATTTTGTGCATTATCCACAAACCACAACTAGAAAAACGATAGAGTTGCCAAATCACCTACTTTTGAAATCTTTAAGAATTTATGTAATTATGCCTTCAGGTGTTTGCTAAGAAATTACACAGTATTTTAAAAATTTATCTGTGAGAATAATTATTTTAAAATATACATTTCAG
Seq C2 exon
GCTTGAAAAAGATAATGCCAAGTTAAAAGTTACAGTCAAAAAGCAAATGGACAAAATTGAGGAGCTTCAGAAAAACCTGTTAAATGCAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890:ENST00000376087:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=0.398
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development