HsaINT0008656 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27317781-27318285:-
Coord C1 exon
chr10:27318215-27318285
Coord A exon
chr10:27317875-27318214
Coord C2 exon
chr10:27317781-27317874
Length
340 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TTTTAAAATATACATTTCAGGCT
3' ss Score
5.68
Exon sequences
Seq C1 exon
TTGCAAGAAGCACAGGATCGACATACAGAAGCTGTCAGATGTGCTGAGAAGATGCAAGATCACAAGCAAAA
Seq A exon
GTAAAATTTAAAGCAGCACACAGAAAAACATGATTATTTATAGAGCAAATAAGCAGTGTAGTATGAGAATTATATCAGCTATGATCATAAGTACATCTGTGTGAAGTCAAGGAAAAATTTCAGCATTAAGCAATTTTGAAATGCGGATTTTTTTATATTATCCTAGAATTTTGTGCATTATCCACAAACCACAACTAGAAAAACGATAGAGTTGCCAAATCACCTACTTTTGAAATCTTTAAGAATTTATGTAATTATGCCTTCAGGTGTTTGCTAAGAAATTACACAGTATTTTAAAAATTTATCTGTGAGAATAATTATTTTAAAATATACATTTCAG
Seq C2 exon
GCTTGAAAAAGATAATGCCAAGTTAAAAGTTACAGTCAAAAAGCAAATGGACAAAATTGAGGAGCTTCAGAAAAACCTGTTAAATGCAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)