GgaINT1001556 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21458121-21461671:-
Coord C1 exon
chr7:21461557-21461671
Coord A exon
chr7:21458228-21461556
Coord C2 exon
chr7:21458121-21458227
Length
3329 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
ACTCCTCCCCGCGGCGTCAGGTT
3' ss Score
5.41
Exon sequences
Seq C1 exon
GTACAAGATGCTTGTGAAGGTACCAAGTTTCTCTGACAACAGCAAGGCTATATGTGCAGGCTTTCTTCAGGCCTATGACAGCAGCAAGAAAGAATGGCAGTTGGGTAAAACCAAG
Seq A exon
GTACTTCATCAGCGTGGGGCAGGGCATGGCTTTGTTTGAGCTACAAGGGGATGTGATTGCATCCACTGAGACTTTTTTTTCCCTGGGAAAAGTCATTCAAATGCTTGTTCCCACTTGCTTGACTCAGATTTTCCTCTCTTCTGGTGAATCCTTAACACTTCTGCCATAGCTTTGGTGGTGGTGGTTTTTCTCCAGACATCCACGTGAAAATGTGCTGTTATCTTTCATGTAATGGGGAGGGACCTGTGGGATTCATTCTGAGCTTTATTCAAGTTTCGAGACAGCTTCATAAGAAGGTGTGAGCCCTGTGAGGTACGTTGCTGGGAGCGGGGAACTGCCTCTGACACAACTTCACATGTACTCCAATAGATTATTTGTAGAATATGCTGAGATAGGTGGTATCCAGTGCAGACAGTGTTATAAGCAGTGGGTGTACAGTCCATATCCAAAGCAAGGTGGTGGTCCACTTTCCAAGGCCTTCATCTGTATGAGTGCAGTCATGTTCCAGAGAAGCTTTTCTCATGTTGGTGTATTCCCAGCCTCTGTTTCCATCTTTGATTTGGGAATCTGTTCTCTCCTCACTGGTCTCTGCAAACCAGGAACCATTTCAGTCATTCTTGTCCCTAGATAACCCGTGCTGCTTGGGTAGCTGCCATTCTCCCAGGACTTGAGTGTTAAAGCCCGTGTGGCATGCGTGTGTGCTGCTGAGCTGCTTTGCTCAAGGAAGGGAGTTGCTAGAGCTAGTAAACAGGGAGCTCAAACTTTCTTCCTAGTATGACAAGGGATAGAATATGGCTTGATGAAGGAAAGAGCTCTGGCTTTTTTTCAAGAAGCTTTCGAGTATGGGTGAAGTGAAGCTCCCAGCTAAAGGGATGTGATGGAGGTTGTCATCCTGGAGAGAAAGTCCCGTGTGCCCTTGGTGCCTCTTTGACTGCTCCAAGTGCAGCTCTTGTACCCAAGTGAGATCTACCCTTGGGGTATGGAGTTGGGAATAGTGCTGCAAAAAGGTGTGATAGGCCAGTGGGGGCATAACCTAGGAAGGAGTATGAGGGGTGGGTGAAGAGCAAGGCTTGTAGAAGGGAGAATACTTCCTGCAGAATGAATGGAAGGATAATTATATCCCTTGCAATTGTTTGGAGGAGGAAGGAAAGAACTCTGTGAATTAGTGCAGGGGATTGTGAAGCTTGGGAAAGGAAGTGGGGGAGGAAGGGCAGGATGATCTTTGTGTTTTTCATTAAGAATAGAGCAGCTGCTGTGCTGGCAATTGTCAAATTAATGTTTATGAAAGCTATTAATGCAGGTTCAATCCGGTGGCATGGCAGAGGTGAGGGGTTGGATGCAGACGTGATGATGGAAGGCCTTGTGCTGATGTGCCCTCATCTCTACTGGGGATGTGCTGGGCTGCCATGTCCCTTTCCTCTGCTCAGGAGCACTGTGCTGGTAAACCAGGCCAGTGTACAAAGTGAGCAGATCAAAGTAGCCTGTGGCTTTGTCTAATTGTTCATTCCTCAGATGAAAGCGATCTCATGTTTTCAGAAAGCAGCTATGAATTATGACAAAGAAACAGCCACCTTACAGCTATTCCCACAAAGCATCCAAAACATTTCTGGATTCAAATTCACTTCGTTCCCATTATCTGCAGGAGGCTGAGAAAACACCCTCAACGTGCCATTAGCTTATAGACAGGCACTGTATTTATGCCACATGTTGTTTGGGATGAACCCTTCCATCTATGAGCATATACAGAAAACTCGGCAGGATCAGGGTAGGGTCTTGAACTCTGCGTGCTTCAAAGTTGTTTTTCCCCCCTCCTTACTGGCACGAAGAGGTCTGTTTGCTAGCAAAATGCTGCCAGACTTGAGTATTTTTGCAATTTGATGAAGATAATGGCCTGAGACAATGTTTTGCTGGCTGCCTTCTTGAAATGGGTGACTGCTGCTCTGTTCTGGAATGTAATTGAAAGAACAATCTCTGCCTCAAAGAAGTCTTTAAAAGATCATTGAGTTGACAGAGGGAGTGGATGTACAACTTGCAGGGAAGGGTGCCAGCTTCATAGTTGGCAGTACCCTGATAATGAACCTTCTTTTAAGGCTGCCCGCAATTAGTCATTACCAAACAGCTCATTTCTTTGGGCCGTCTTAACAGAATTGGCTCCCTGGGAAGGAGCTGAGTGCAGGGTGATAACCAGGGGAGAGTGGTGGGCATGGCTGGGGGGGAGAGGGGGAGCCTAAATAGGTGATAGGGCCAAAAGCAAGGATGGAGAAGGCGGCACTGTAGTTCACAGGGTAGTGTAGTTGTGCAGAGCAATGAGTTCCAGCTCCCAGGCCGTGTTCATAGCTGTGTTTTGCTAAGTGGGGCAGCACTGCCCTCCCGCAGCCTGCCCTGCTGCCGGCCCTGGCAGGCACCGAGCCCATGTCACTGCGGCCATATGGCGGTGGTGCTGTGCCTGCAGCCTGCGAGGACCAACCGTAGCCAAATTTAATCTGGGCTATTGCCGCTGACAGCTCCGTGCGGGCTGCAGACCTTCTCAACAGGCAAAGCATGTATTTGGGCAACTTGCACTGACCTCCCTGCAAGTCAGCTGATTTAAAGTAGCTCAGATACGTCAGGCCGTTTCCTGCAAGCAAGCCCTTATCTTGCTTTGTCTCTAAGATAGTGCTCCATCCCTCGTGCGAGCATTTAGCGCTGAGCAGAGGTTCGAAACAGAGGTGGTGGAGGATGCCGGGGAGAAAGCAGTGGAAAGCCAAGCGCAGCCGCTGACGCTCGGCGAGCCGTCCCGCGGGGCTCGGGTCCCCCGGTGCGCGATGCAGCGCAGGACTTCAGCCAGCAGCCTCTCCCCGCTGCTGCTGGGGCTGAGCGGGGGGAACGGGGTACGCTCCACTTCACCCCCCGAAGGCCCCTTCGGCTCTCCTGATGCTGTTAGAACCGCTGCCGGGTTCCCGGAGCCTGGAAATCGCAGCGGCGGAGTTCCATCGCAAAGCGCTCCCCCGTGGCAGCGGGTTGCTGCGGGGCCAGCTGTCAGCCGGGAAAGGGTTAAGGCCGGGCGCAGGCACGGGCTCTCCTCCTCCCTCGTCTCCCTCCTTCCTCCGCTCCCTTTCAAGTCTTGACCGCAGAGGGCGGGGGGTGGGGGCTGGCCGCGGGGCCGAGCTCCGACGCCGCCAAACTTTGCGCCGTGCCGTGAGCGAGGGCGGCCGGGCCGAGGCGGCGGCTGCGGGCAGCCCCAGGCGCTGCGCTCCCGCGGCCGGGACCTCCCGGCTCCCCCGGGGCTCCCCCGGGACTGACTGCTTTCCTCTCTTTGTGTTTCTCGAAACTCCTCCCCGCGGCGTCAG
Seq C2 exon
GTTTTCCTGAAGGAAGCTCTCGAGCAGAAGCTGGAGAAGGATCGGGAAGAGGAGTTGAGGAAAGCTGCTGTAGTCATCCGGGCCCACGTCTTGGGCTACATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]