GgaINT1001576 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P341]
Coordinates
chr7:21631023-21631409:+
Coord C1 exon
chr7:21631023-21631232
Coord A exon
chr7:21631233-21631303
Coord C2 exon
chr7:21631304-21631409
Length
71 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AACACCCACTGCCTCCACAGACA
3' ss Score
7.9
Exon sequences
Seq C1 exon
CCGCTCGGTCCCCGCAGGCCGGGCTGTACCGGGTGCCAGGCGTGGAGCCGCTGGTGCGGGAGTGGAAGCGGCGGCTGCTGCACGGCAGGGAGGCCCCGAGCGGCGTGGCCGACATCCACGTGGTGTGCGGCGTGCTCAAAGACTTCCTGCGGGGCCTCAAGGAGCCGCTGGTCACCTTCGGTCTGCACCCGGCCTTCCTGCGGGCCGCTG
Seq A exon
GTGAGCAGCGGTGTGGGGGTTTGGATGGGGGGGGGGCCGCTGCGCTCCCGTAACACCCACTGCCTCCACAG
Seq C2 exon
ACATCCCCGACGAGGCTGCCTGCAGCACTGCCCTGCGGCACGTGGTGGGCAAACTGCCCGCCGCCAACAGGGACACGCTGGCCTTCCTCATGCTGCACCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011252:ENSGALT00000018359:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(50.7=97.2)
A:
NA
C2:
PF0062022=RhoGAP=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAAAGACTTCCTGCGG
R:
CAGGTGCAGCATGAGGAAGG
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]