MmuINT1029455 @ mm10
Intron Retention
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99624238-99626381:-
Coord C1 exon
chr15:99626183-99626381
Coord A exon
chr15:99624344-99626182
Coord C2 exon
chr15:99624238-99624343
Length
1839 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
ATGCTTTCTTGTCATCACAGAGA
3' ss Score
6.06
Exon sequences
Seq C1 exon
GCAGGCTTGTACAGGATCTCAGGCTGTGACCGCACAGTGAAAGAACTGAAAGAAAAATTCCTTAAGGTGAAAACTGTGCCCCTCCTCAGCAAAGTGGACGATATCCACGTCATCTGCAGCCTCCTGAAGGACTTCCTGCGCAACCTCAAAGAGCCCCTCCTGACCTTCTGGCTGAGCAAAGCCTTCATGGAGGCAGCAG
Seq A exon
GTGAAGGCAGAACTTGACTGTGGCGTCAGCCGATCCAGGGCTGAGCTGTGTTTACAGTTTACTAATTTTTCCACCACCTGTGCAGTGTCTGAAGTGTCCTAGGTACCCAGACTGTTGGGTGGGTGAGTGACTGTCCTCGCCTCCCATCATGCCGTTTCTTCCCTGAACTAGAGAGGCTAAGAGATGCTCTGTGGTTGAGCACTGGCTTCTCTTCCAGAGGGTCTGGTTTTGATTCGTAGCTTCTGCAAGGGTGGGTCACACTATTTGGAACCCCAGACCGGAAGGATCTGCTGTACTCTTCTGCCCCCTCAGGCACCACATAAATGCTGGCAACGTATGTGTACACATAAAATAAAGGGAAGAATTAAACTAACTTAGACTTCGTAGGACTCACTGTGGGTCTTGATTCTTGGTCAGGTTTTAGGTTGTCCCTTTGAAAATAGAACCAGCTTTGATTCCTTTCTTTTCCACCACAGACCTTGTTAGCAGCCTGTAAATACACTTTAAATTTGGTATTTGTCACGAGTCCTGGTACTCAGCTGTCCTCAGAATATGTTGAGAACCTGCTAACAGATTGTCGAGTTTCTGCTTGTGCCCCTACATGATAGCATCTGTGTGGTGCTGGTGTGGTCCTTTTACACTCAGAGTTACTGGTGGCCCTTTTGTCTCTGTCCACCATTGTTTTGTTTTGTTTTGTTTTTTGAGATAAGGTTTCATTGTGTAGTTCTGGCTGTCCTGGAACTCACTTTGTAGCCCAGGCTGGCCTCATACTCAAAGATCTACGTGCCTCTGCCTCCAAGTGCTAGGATTAAAGTCATGTGCCACCATGGACTGGCTTGTCCATCATTTTTAGACTAACTCCAGTCTTTAACATGGTTGAAGAGACCTGCAGACTTGGCTCCTGGTCATTGTCTGCAACACCATTTTCTTTATGCCCCTCCTTCCTCTTTTCTAATCCTGGAGTCTTGGATTTCTTTTTATTTTATGTGTATATTTTATGTATATGTTAAGAGCCAGTGAGTGCTCTTAACTGCCGAGCCATCTCTCCAGCCCAGAGTCTTGGATTTGTAGCACACACCCACCTCACGTCCTTCCCATTTGCTGCAGTCTTATCCCTAGCAGCTTCCCCTGACATCTCTGTACTGTGTTACTTCTCTCTCCCCGGTTTCTCTTCACACATTTTGTCCTTAGAAACACGTTTCCTAAGCCAGGTGCATGACGTGGTAGTCCAGCGCTTGGGAAGGATGGCAGGAGGGCCGGATGTTTGAGACCAGCTTTGGCTACATAGTGAGTTGAGACTGGAGTAAGCTACCTGGAACCCAGTTTTTAAAACTAACCACAAAACCCGCCTTTATGGCCATCTTGTGAGAAGCAGGCCCTGTTACTTTAGCATTCCACGTGCTCATTTTCTTTTTTCCTGAATACTGCTTGACATGTGTTTTGTTTTTTGCATTTCCTGACCAGCTCTTTGATTAGAGTATTTATTCCATTAAACAAGGCCTCTTTTCGTTTCGTTATCCTCACATTTAAAAATAGCACGTGGTACATAGTAGGCCCTCAAGTGTCCTATGATTGTTGATGGTTTATCACTGCACTTGTGTGTCTTCCCAGCAAATGGGTTGCCAGCTGCTTTCTCTTAACTGAGTTTTAGGAAGTTCTGACTTCTCATTGAACTGTTGGCCAGTGTCCTGCCTGTTAATGAAACTAGAGTCTGGTGCTGTCATGAACCGCATCAGAAGTTTCAGAAGCTCCGTGTATAGGTGGGCCTTTGTGGTCGATAGCCTTGAAGCTGCTGTCCAGGGAAGAGCCTGGACCTTTAATGCTTTCTTGTCATCACAG
Seq C2 exon
AGATAACAGATGAAGACAACAGCACAGCCGCCATGTACCAGGCTGTCAGTGAGCTGCCCCAGGCCAACAGGGACACGCTAGCCTTCCTTATGATCCACCTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015:ENSMUST00000171702:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTTGTACAGGATCTCA
R:
TGTAGGTGGATCATAAGGAAGGCT
Band lengths:
302-2141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types