RnoINT0123516 @ rn6
Intron Retention
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141281098-141283449:-
Coord C1 exon
chr7:141283251-141283449
Coord A exon
chr7:141281204-141283250
Coord C2 exon
chr7:141281098-141281203
Length
2047 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAGCTTTCTTGTCATCACAGAGA
3' ss Score
4.71
Exon sequences
Seq C1 exon
GCAGGCTTATACAGGATCTCAGGCTGTGACCGGACAGTAAAGGAGCTGAAAGAGAAATTCCTTAAAGTGAAAACCGTGCCCCTCCTCAGCAAAGTGGACGACATCCATGCCATCTGCAGCCTCCTGAAAGACTTCCTTCGAAACCTCAAGGAACCCCTTCTGACCTTTTGGCTAAGCAAAGCGTTCATGGAGGCAGCAG
Seq A exon
GTAAGGGCAGAACTTGATTGTGCCACCAGCTGATTCCAGAACTGAGCTGTGTTCACACAGTGTACTAATGTTTCCCTACCTTATACAGTGTCTGAAGTGTAGTAGGCACTCAAACTGTTGAGTGGGTGAGTAACTGTCCATGCCTCCCATCATGCCGTTCTTCCCTTACTTAATTAGAGAGGCTGAGAGATGCTCTGTGGTTGAGCACGGGCTTCTCTTCCAGAGGATCTGGTTTTGATTCGAAGCTTCTGCATGGGTGGGTCACACTGTCTGTGACCCCAGACCTGAAGGATCTGTTGCCCTCTTCTGCCTCCTTCAGGCACCACATAACTGTCGGCAAAGTGCAGCAAAGTGCCTGTACACATCAAATAAAAGGGAAGAATTAAACTAAATTAAACTAAGCCTGTTTGTTGGTCTTGGTTCTTGGTTGGGTTTTCGGTTGTCCTTTCGGAAACAGAACCAGCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATTTTATTTATTGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGCCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAGAACCAGCTTTGATTCCTTTCTTTTCCACCACAGACCGTGTTAGCAGCTTGTAAATACACCTTAAATCTGGTATTTGTCATGAGTCCTGGTACTCAGCTGCCCTCGGAACATGCTAAGAACCTGCTGACAGATTGTGGTGTCTCTGCTTGCCCCTACATGATAGTGTCTGTGCGGGTGCTGTGTGGTCCTTTCACATTCCTAAGTTACTTGGTGGCCCTTTTGTCTCTGTCCACCATTTTTATTTTATTTTATAATTTTTGTTTTGATTTTTGAGATGAGGTTTCACTGTGTAGTCCTGGTTGTTCTGGAACCAGGCTGGCCTCAAACACAAACATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAGAATCATGTGACACCTGCTAGGCTTGTCCATCGATTTTAGACTAACTTCATCTTTATCGTGGTTAAAAAGACCTGTGTGACTTGGCTCCTGGTTATTGTCTCCAATACCATTTTCTTTATACCCTTCCTTCCTCTTTTCTAATCGTGGAGTTTTGGATTTTACTTTTTATTTTATGTATATAGGTGTTTTACATGTCTGTGTACCACATCACACAGTGCCTACAGAGGCCTGAAGAGGGTGTTGGGTCCCCCACAGCTGGAGTTACAAGCAGTTGTGAGCTGCTGTGTGGGTGCTAAGAACTGAACCCAGGTCCTCTGTAAGAGCAGCCAGTGAGTGTCCTTATCTCTCCGCCCAGTCTTGGAATCCATAGCGTCCACCCACCACAAGTCCTTAGCCCCAGCAGCTTCCCCCTGGATGTCTCTGCAGTTTGTTTCCCAAGCCAGGTGTATGACATGGTAGTCCCAGCACTTGGGAAGTAGAGGCAGGATGACCAGGTATTTGAGACAGCGTTGGCTACACCATGAGTTTAAGATTGGAGTAGGCTACGGGACCCAGTTTTAAAAACTAACCTTAAACCCACCTTCTGCCCAGAGTGTGAGAAGTAGCTGACCCCATTACTTCAGCGTCCCATGGCTCCTTTTTTCTACCTGGCATGTGCTTTGTTTTCCCTGACCAGCTCTTTCAGTATTTATTCCAGGAAGCAAGGCCTCTGTCTGCTTTTTCCTCACACTTAAAGCAGCACCTGGTACAGGGTTGGCCCTTAAAGGTGGGATGACTGTCGATGGCTGACCCCGCAGTTGTCTGTCTTCCTAGCAAGTGGGTTGCAGCGGTGAGCTTAGGCTGTTTGAACTGTTGGCCAGTGTCCTGCCTGTTCATGAAACCAGAGTCTGGTGCTGTCATGAGCCTCATCAGAAGTTCCAGAGCCCCGTGTGTAGGCGGCCTTTGAGGTCGGTAACTTTGAAGCTGCTGTCCAGGGCAAGAGTCTGGACCTTAGAGCTTTCTTGTCATCACAG
Seq C2 exon
AGATAACGGATGAAGACAACAGCACAGCCGCCATGTACCAGGCTGTCAGTGAGCTGCCCCAGGCCAACAGGGACACGCTAGCCTTCCTCATGATCCACCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033:ENSRNOT00000071885:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]