GgaINT1023215 @ galGal4
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:340643-341562:+
Coord C1 exon
chrLGE22C19W28_E50C23:340643-340841
Coord A exon
chrLGE22C19W28_E50C23:340842-341456
Coord C2 exon
chrLGE22C19W28_E50C23:341457-341562
Length
615 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTAAATTTTTTCGCTTCAGAAA
3' ss Score
8.41
Exon sequences
Seq C1 exon
AAGGGCCTTTACCGGATATCTGGCTGTGACAAGACAGTGAGAGAACTGAAAGAGAAGTTTCTCAGATCAAAAAATATTCCTTCGCTCAGTAATGTGGATGATATCCACGCCATCTGCGGTCTCCTGAAAGACTTTCTACGCAACCTGAAAGAGCCCCTTCTCACTTTTCGGTTAAACAAGACTTTTATGGAAGCTGCAG
Seq A exon
GTAAGGAGACAGGGAGACAGAAAGTGACATCCACGTTTTCCAAAGGCTTAATGACAGGTTTGTCTGACACGTGAGCTGGCAGACCTCACTGCTCCTACTGCAGCTCTGCTGCGGATGCTCAGGCTGCTGGGGAGATCTTTTTTCCAAAATAGCACAGCAAAAGAGGAGAGAAATTCCAGTTGAAATTCAAGTTCCTTCCAGAACATGAGGGGAGCTTACAACCAGGAGGGAGAGCAGCTTTTTACAGTCAGATAGTGGTAAGACAAGGGGGGATGGCTTTAAACGAAGAGGGGAGGTTTAGGTGAGATGTGAGGAGATAATTCTTTGCTTAGAAGGTGCTGCCTGGAGAAGTGTGAGTGCCCCATCCCCAGAGTTGCTCAGTGCCAGGCTGGGTGGGGCTGTGGGCAGCCTGATTTAGTTGGTGGCAACCTAAGCCACTGGATGATTCTCTTACATTCTAGTGCTTGATCTGGATACGGAAATATTGGAATGATTAGGGCTCCTGGTTTGTTTCTCAGACTAGCTCTTACTGTGGGGGGGAAAATAGTACAGCTGTGCCTCTAGAACTGCTTTCTGAGATTTTGAACTTTTCTTCTTTAAATTTTTTCGCTTCAG
Seq C2 exon
AAATCTTAGATGAGGACAACAGCATAGCTGCTATGTACCAAGCAGTTGGGGAACTTCCTCGGGCCAATAGGGACACCCTGGCTTTTCTCATGGTTCATCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTTACCGGATATCTGGC
R:
CTCTGCAGATGAACCATGAGA
Band lengths:
302-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]