GgaINT1001768 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34679907-34680551:-
Coord C1 exon
chr7:34680459-34680551
Coord A exon
chr7:34680000-34680458
Coord C2 exon
chr7:34679907-34679999
Length
459 bp
Sequences
Splice sites
5' ss Seq
TCGGTACTC
5' ss Score
3.1
3' ss Seq
TACTCCCTTGTATCCTATAGGTT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTGTTATATAAGGAGAACATAGGGAAAGCCACTCCAACCCCTGTGACTCCTGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
Seq A exon
GTACTCCTACAGGAAACCAATTCCTGAAGACCTGATGTGTTTAACACACAGTAGCAGTTTTACTCATCTGTGCTTCCTAACTCTTAAAACAAACCCTGTCAGGTAGCATGAGCACCCCCACTCTGTGCTTGCAAATGGGTTGTAATTTCTCCTCTCCTGTTTAACACTGTCGGAAGCAGGATTTAACTAGAATGGTTTGACCTCTGATTATTTCTTTTTAAGGTCGTTGTTTCTTTGCAATTTAACTATTTCTTGTAACAATCTTGCTTTTACACTCAGTTGATAATGAATTAATGGTAAAGCTCCCATTGCTCCTTTCAGGAGTCGCAGTGGCCCCAGATCTAACCCCGTCCGAAGCGTAATAACCCAGAAGCTGTTATTGTCCGTGGTTGGTTGTGGTTTCTGTGCTGGTGGAAGTATGTTCTTAATGATATCTGGATACTCCCTTGTATCCTATAG
Seq C2 exon
GTTTTGTACAAAGAAAATGTGGGGAAAGTGACCCCAACACCCATCACTCCAGAGATGGAGAGAGTCAAACGCAATCAAGAGATCATTAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=0.530
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(59.3=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(57.1=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATATAAGGAGAACATAGGGAAAGCC
R:
CGAGCTAATGATCTCTTGATTGCG
Band lengths:
182-641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]