GgaINT1003210 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L069]
Coordinates
chr16:478726-480245:-
Coord C1 exon
chr16:480230-480245
Coord A exon
chr16:479958-480229
Coord C2 exon
chr16:478726-479957
Length
272 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGG
5' ss Score
2.53
3' ss Seq
CCCCCTGGACTTCAGCACAGGTC
3' ss Score
1.1
Exon sequences
Seq C1 exon
TGGGGGACAGGAGGAG
Seq A exon
GTTGGGGCTGGCAGAAGCCATCTCTGACCGGGCAGTATTTTGGCACAGTGTGTTATTTCTGGATCACCTCTGTCATCCAGCAGGTGATAGGATGACAACTACAGAGGAGGTGCTGCAGAAGTGCGATGTGACTGAATGGCAGTGGGGCAGTGCCTCGGTGGGAAAAGCCAGAAGGGATGTCCCAGGGGGCCTGGAGCAAGGAGAGCACTTGAAGAAGCATCAGGGAAACCCTCCGGGAGAGACTGTGAGGAACCCCCTGGACTTCAGCACAG
Seq C2 exon
GTCAAAAGCAGCCTGAAGACGCAAGGAGCAAGGAAGTGTGCCAGGAGGAAAGACAGAACCCAAGTGATGAGTGTGCGAACAGCCTTAAAAGGAATTCTGGCCTTGTTAACTGCCAGCGTACCCACATAGCAGACATACGGTTTAAATGCCTTGAGTGTGAAAAGAGGAACGTAAAAAGTTGCAACTTGCTCATGCGCCAGCAGGACCACACGGGAGAGAGACCCTTTAAGTGTCCTGAGTGTGGGAAGAGCTTCAGAAGCAGTTCGAACCTCCTCCGCCACCAGCGCATCCACACAGGAGAGAGACCTTTTAAGTGCTCTGAGTGTGGGAAGAGCTTCAGAAGCAGCTCCGACCTCATTGTCCACCATCGCATCCACACGGGGGAGAGACCTTTTAAGTGTCCAGAGTGTGCAAAGAGCTTCAAAAGCAATTCTCACCTCACCTCCCACCAGCGCATCCATACGGGAGAGAGACCCTTTAAGTGCCAAGAATGTGAGAAGAGCTTCAAATGCAGTTCGCACCTCATCCACCACCAGCACGTCCACACAGGAGAGAGACCCTTTAAGTGCCCTGAGTGTGGGAAGAGCTTCAGTAGCAGTTCAAATCTCAGTGACCACCAGCGCATCCACACAGGGGAGAGACGCTTTAAGTGCCCGGAGTGTGGGAAGAGGTTCAGCAGCAGTTCCAACGTGATTATCCACCAGCGCATCCACACAGGAGAGAGACCCTTCAAGTGCCCTGAGTGCGGGAAGAGCTTCAAAAGCAGTTCCACCCTCATCAACCACCAGCGCATCCACACGGAGGAGAGACCCTTTGAGTGCTCTGAGTGTGGAAAGAGCTTCAAAAGCAGTTCTGACCTCATTGTCCACCTGCGCGTCCACACAGGATATAAACCATACAAGTGCCCAGAGTGTGGGAAGAGCTTCAAAAGAAGTTCTGAATTGAAGTGCCACCAGCGTATCCACACGGAGGAGAGACCCTTTGAGTGCTCTGAGTGTGGGAAGAGCTTCAGCAGCAGTTCCAGCTTCAGCTACCACCAGCGCGTCCACACAGGAGAGAGACCCTACCAGTGCTGTGAGTGTGGAAAGAGCTTCAAAACCTCTTCCTACCTGATTGTCCACCAGCGAATCCACACAGGAGAGAGACCCTACCAGTGCTGTGAGTGTGGGAAGAGCTTTAGCAGCAGTTCTAAACTCAATTCCCACAAGCACATCCACAGAGGAGACAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024335:ENSGALT00000022016:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF132401=zinc_ribbon_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF132401=zinc_ribbon_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF127602=Zn_Tnp_IS1595=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]