HsaINT0187933 @ hg19
Intron Retention
Gene
ENSG00000102870 | ZNF629
Description
zinc finger protein 629 [Source:HGNC Symbol;Acc:29008]
Coordinates
chr16:30789770-30795836:-
Coord C1 exon
chr16:30795731-30795836
Coord A exon
chr16:30795576-30795730
Coord C2 exon
chr16:30789770-30795575
Length
155 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GACTCCCTTTCTTTCTGTAGGTG
3' ss Score
11.02
Exon sequences
Seq C1 exon
GGTCCCTGGAACACTGCAGTCCTGAGCTCTGGGATGGAGCCCGAGACTGCGCTGTGGGGCCCGGATCTGCAGGGTCCGGAACAGAGCCCCAACGATGCTCACAGAG
Seq A exon
GTGAGGGGCACAAGAAGGGGCTGCGGTCCCGGCAAGACGGTGGTCCCGGCTCAGGGAGGGGCCTGGACTCTGGGGGACACCCGGGGGAGGGAAGAGAGACCAAACCCCGTGTTCTGAAAGGGGCTGGGGGCTGTAGACTCCCTTTCTTTCTGTAG
Seq C2 exon
GTGCCGAGAGTGAAAACGAAGAGGAGAGCCCTCGGCAGGAAAGTTCTGGGGAGGAGATCATCATGGGAGACCCGGCTCAGAGTCCAGAATCCAAGGACTCAACAGAGATGTCCCTGGAGAGATCCTCCCAGGACCCCTCTGTCCCCCAGAACCCCCCAACCCCACTGGGTCACTCCAATCCCTTGGACCACCAGATCCCCCTGGACCCCCCAGCCCCGGAGGTAGTCCCTACCCCATCTGACTGGACCAAGGCCTGCGAGGCCAGCTGGCAGTGGGGCGCTCTCACCACATGGAACAGCCCCCCAGTCGTCCCCGCCAACGAGCCCAGCCTGCGGGAGCTGGTGCAGGGCCGCCCGGCGGGGGCGGAGAAGCCCTACATCTGCAACGAGTGCGGCAAGAGCTTCAGCCAGTGGTCCAAGCTGCTGCGGCACCAGCGCATCCACACGGGAGAGCGGCCCAACACCTGCTCCGAGTGCGGCAAGAGCTTCACGCAGAGCTCGCACCTGGTGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACAAGTGCCCCGACTGCGGCAAGTGCTTCAGCTGGAGCTCCAACCTGGTGCAGCACCAGCGCACGCACACGGGAGAGAAGCCCTACAAGTGCACGGAGTGCGAGAAAGCCTTCACCCAGAGCACCAACCTCATCAAGCACCAGCGATCCCACACCGGCGAGAAGCCCTACAAGTGCGGCGAGTGCCGCCGGGCTTTCTACCGCAGCTCGGACCTCATCCAGCACCAGGCCACCCACACAGGCGAGAAACCCTACAAGTGCCCCGAGTGCGGGAAGCGCTTCGGCCAGAACCACAACCTCCTCAAGCACCAGAAGATCCACGCGGGCGAGAAGCCATACCGCTGCACCGAGTGCGGGAAGAGCTTCATCCAGAGCTCGGAGCTGACCCAGCACCAGCGCACGCACACAGGCGAGAAGCCCTACGAGTGCCTAGAGTGCGGCAAGAGCTTCGGCCACAGCTCCACCCTCATCAAGCACCAGCGGACTCACCTGCGCGAGGACCCGTTCAAGTGCCCAGTGTGCGGCAAGACCTTCACCCTGAGCGCCACGTTGCTGCGGCACCAGCGCACGCACACGGGCGAGCGGCCCTACAAGTGCCCAGAGTGCGGCAAGAGCTTCAGCGTCAGCTCCAACCTCATCAACCACCAGCGCATCCACCGCGGCGAGCGGCCCTACATCTGCGCCGACTGCGGCAAGAGCTTCATCATGAGCTCCACCCTTATCCGCCACCAGCGCATCCACACCGGTGAGAAGCCCTACAAGTGTTCCGACTGCGGCAAGAGCTTCATCCGCAGCTCCCACCTTATCCAGCACCGCCGCACGCACACCGGCGAGAAGCCCTACAAGTGCCCCGAGTGCGGCAAGAGCTTCAGCCAGAGCTCCAACCTTATTACCCACGTCCGCACGCACATGGACGAGAACCTGTTCGTGTGCTCCGACTGCGGGAAGGCCTTCCTGGAAGCCCACGAGCTGGAGCAGCACCGGGTGATCCATGAGAGGGGGAAGACCCCAGCGCGTAGGGCCCAGGGCGACAGCCTGCTGGGGCTCGGGGACCCCTCCCTGCTGACCCCGCCGCCGGGAGCCAAGCCGCACAAGTGTCTCGTGTGCGGAAAGGGCTTCAACGACGAGGGCATCTTCATGCAACATCAGAGGATCCACATCGGAGAAAACCCCTACAAAAATGCAGACGGCCTCATCGCACACGCAGCCCCCAAACCTCCTCAGTTACGATCCCCAAGGCTCCCTTTCAGAGGGAATTCCTACCCCGGGGCTGCGGAGGGCAGAGCGGAGGCCCCCGGACAGCCCCTTAAGCCGCCGGAGGGTCAGGAGGGCTTCAGCCAGAGGCGGGGGCTGCTGTCCTCCAAGACCTACATCTGCTCCCACTGCGGAGAGAGCTTCCTGGATCGCTCTGTGCTCCTCCAGCATCAGCTCACCCACGGCAACGAAAAGCCCTTTCTCTTTCCTGATTATAGAATTGGCCTAGGGGAAGGCGCAGGGCCCAGCCCCTTCTTAAGTGGGAAGCCCTTTAAATGCCCTGAATGCAAACAAAGCTTTGGCCTCAGCTCTGAGCTGCTGCTGCACCAGAAAGTCCATGCAGGCGGGAAGAGCTCCCAGAAGAGTCCAGAGCTGGGGAAGAGCTCTTCCGTCCTCCTGGAGCATCTCAGGAGCCCCCTGGGGGCCAGACCCTACCGCTGCTCAGATTGCAGGGCCTCCTTCCTCGACCGCGTGGCCCTCACCCGGCACCAAGAAACCCACACCCAGGAAAAACCCCCCAATCCCGAGGACCCCCCTCCAGAGGCAGTCACCCTGTCCACAGATCAGGAAGGTGAGGGCGAGACCCCTACCCCCACAGAGAGCAGCAGCCATGGGGAAGGGCAAAACCCCAAAACCCTAGTGGAAGAAAAGCCCTATCTGTGCCCCGAGTGTGGAGCCGGCTTCACAGAAGTCGCAGCCCTCCTGCTCCATAGGAGCTGCCACCCAGGTGTCTCCCTGTGAAATGGGTCTGGAGACCAGGGGCCTCGCTCTCTCCAGAGAGGAACACTGGATTTTTTCCCCCAAAAAAATTACATGGGGAAGGGAGGATAACCCTATCAGATGGTAGTGGAGTGGAGGAGAAAGAACCCTGGGAAAAAATAGTGCTTTTACATCAGTGATGAGAAACCCTATAAAATTGTTGGTGGGAAGCACTTATAAGGCAGTAGAGAAAAACTGTTGGGTTAGAAACCCTATAAATATGTAGGAAAAAAAAAAGCCCTTTAAGTCTGTAGCAGAAAAACCCTATAAACCATAGTGGATAAAAGCCCTATTAATTGTAGGAAGAGGTCCCAATATGTCTCTGAACAACCCTATAAAATTGTATCAAAATCCTTAGGAAAATCCTATAGGGTCGGGGAAGTACCGCAATGGCACTGACCCGGGAGTAACGACCCTCAGATGATGCAGAAAACACCTCTCCCTCACTGTTCCACAATGTTCTCTCCCAGCAGCCCTGGACAGTTCTCATGGAGGAAGATGCTCAGCTGGGGGAGTGGTGTGGGAACTGGGTGGAACTGAAAAGGAAGAAAATAGGAGAAAAATAAGTGACCAGGAGCTCTGGAGCCCCCAGAGGAGATAAGACAGAGACTAGGAAGAAAAGGTCCCACTCACTGCACTGGGGTCCTTGGGGTTTGAGGACAATGTTAGATGCATTGTGTGTTTTAGGGAAAGAGGCCTATGGAATCCCTTATCAAAACCCCAAAATGGGGAAGAAAAAACAAATTGGCAAGCCTTTTTAAAGGCTGAAGTTTGGGGTGCAGAAACATGGTCAGTATAAGAATACTGAGAAACCACCACAAAAATTAGGGGGAAGCAGGGGGCAGTTTCTGTTAGATTGCTTTGAGGGGAGCAAACCAAGGTGGGGAAACTGCTCACATGGAACCCAGCTAACTCCAGGCCCCTTCTTGCTTCCGGAAGCTTGCGAAACTGCAAGTAGCAGGCAGGTCCCAGCTCTCAGAGTGCAAGGGTTCTCCCCACACCAGGCAGGACCACCCTTTCTCCCTGCCCAGCCAGGGACTTCTACTCTGCAAGGCCTCCAGGGATGGCGGTTGCCTCCCACCACATTCTCAGGTCTCACCTTCAGGAGGTTTTTCCTGAAATCTAACTGCCGCCAGTGGCAGCTCATTTCCTCAAATTCTGTCCTCAGTGGAGAGGGAGAACCGCTGCTAGTCGACCTCCAAAGAATAAAGCCCTTCAGAGACTTAGGGCCTGCGTGTGGGCCTCCCCAGCCTTCTCCAAGTCATCAGGGCCACAGAATTTCTTAGAAAGCTTTGATTAGCCAGCAACTTGATTTTAAACTTCAGCTATTCATCTTTGTTGGTAGCAAGGCTGCCCCGCAGGATAAGGCAGCCCTCCTCCCTGGTGGGGATCCAGACACCCCACAGACTGAGCCACAGGTCCCTGAAGAGTCCGCAGAGGCCGTATCACCCTCTTCACCCTGGTACCTGGAGCCCTCCAGGGTTGTGAGATCCAGCCCAATCTCAGCCTTGAGATGGATGGGATGGATTCCACTCACTTGGCTCCCCTCTCCTCCTTAGCCAGAAACCTTCAGAAGGAAACAGAAGGATGAGAAAGCCTCCCTTGCCAGGCCCATCTCACCTCCCACACCACACAGTTACACATTCATAAACAGCCAAGCCTGCTCACAGGCCTGGGCATATGTGGCTGGGGAGAGACTGTTGCCCTATGAGATGGTGGAAGACAGAAAACTCTTGAATGAAACATCTGTAACAAGACTCCCACTCCCTAATCCTGGAGACCCCTTCAAAAGGAGAGGACTCTGCTCAGCGCTGGGTCAGAAAGGAAGTGCTTGCCAACCCCAGTAATGCGCTGTCCTGGAGTAAGAGGACTGAGATGCCAGCTGTGGGGCCCGTCAGGAGTCACGTCTCAAGAGAGGGGTGACCCAGATTTTTGCAAAGCTGTGGAAGAGACCTCTAATTCCATGACCTAAAGTTTCACACAACCTTTATGCAAATCCTTCGCCATTTGTCTATCCTGGCCCCAGCAGGATGACCCTCACATTTAAAAGGATCAAAATCTCAAACATTGTGGGAGGAAAACGCCAGGCCTGCTGGGGAGAGGGAGAAGGCAGGCCTCAGGATTGTGCGGAGAACCATGTTGCCATCTGCATAACGCCCCAGCCTATCCAAGTGCCAGGAAGGGAAGCACTACTGAGGGGGGTGCTGCCTGTGGGTCTCTTCCTAACAGAACGCCAACGAAGGGGGTGCCCTGTAAGAATGAGAAGTCTGCCAAGTCTAAGGAGATGTCCCCCTCCCCAAGATGGTAGCAGAAACTGAAGTTGTAAAGACAAACCTCTCGCAAAGCCAGAAGCAGATGCTCTCAAAAACAGGCCTAAGGAATCTGTTCCCAGAAGAGGCCTGGGGAGCAGCTTTTGGGGCTCAGAGGCCAGTCTGGGGGGAGGCAGGCAGTGTGACTGAAGGCCGGCGCAGGCCTGTTTCGGACTAGGGTGTAGCATATTTAGTAGGATGCTCACATGTTGTAGGGATGGGTGAGGGCTAAGGGGCTTGGCTCTTGTACGGGATGGATGATGTGAGCGCACAGTTCGTAGGGTCAGGCGTCTTGCGGTAGGAAAGGGGCAGGGTTCGATACCTCTGGGGTGTGGCGTGTTCTCTCTTGCCCACCTCCCCAAGCTCCTTTAACCAGGAGCTTCCCTCCCAGAGTGAGCTACGTCTTGGGAGGATTGAAGCAGGGAGGTGGCAGTGGCTAGAGTTGCTCAGATCGGCTCAGATGAAGGCCCAGGGGTCAAAGCATTTGCTCACCACAACTGAGTCTGGAAGGCACTGTGCAGCCAAACCCTCTTGTCCAATCACATGCAGGCCCCAGGCCCCTCAGAAACGCCCTGGTGGAGGGAGGAGCCCAACAGATAGGGTCAGGGAGTCAGTGGGGAAAGCAGAGGGGAGAGCTTAGAGTGAAACTTGAAACTGCTATGGACATGGAGGTCAGATGGGAACTTGGAACTGGGCATGAATCCTGAATGGTGGGGAAACTTGAAGCCATCACAGCCAAGAGGTGGGGTTCCATGACCTGCCCTGAGGTCAGCAGCTCCCAGACTCCTTTGCCCTCACTAGGGAAGCCCCAGTCACCGGACTTGTCCCCATGGAGTGAAGAGAGGCCCCATTTTTGAGTGTTGTGTGTCCAAAACAGTGTTGTGTCACTGGTGGTCATGTTGCTTAGTTGAAGAGAATAAAGGGAATAAGATTTCCTGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102870-ZNF629:NM_001080417:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF051298=Elf1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF082717=TF_Zn_Ribbon=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.1),PF0009621=zf-C2H2=WD(100=2.7),PF0009621=zf-C2H2=WD(100=2.7),PF0009621=zf-C2H2=WD(100=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGCAGGGTCCGGAA
R:
GGATCTGGTGGTCCAAGGGAT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)