MmuINT0179613 @ mm10
Intron Retention
Gene
ENSMUSG00000045639 | Zfp629
Description
zinc finger protein 629 [Source:MGI Symbol;Acc:MGI:2444524]
Coordinates
chr7:127607031-127612773:-
Coord C1 exon
chr7:127612667-127612773
Coord A exon
chr7:127612563-127612666
Coord C2 exon
chr7:127607031-127612562
Length
104 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GACTCCCTTTCTGTCTGTAGGTG
3' ss Score
10.76
Exon sequences
Seq C1 exon
AGACCCTGGAACCTTCACAGTCTGCAGCCGTGGGATGGAGCCTGAGACGGTGCTGTGGGGCCCGGATCTGCAGGGTCCTGAAGAGAGCCAGAATGAGGCTCATAGAG
Seq A exon
GTGAGGGGCACAAGGGACTGTGGGCAGTCACAGGGGAGGGAAGAGAGACCAGACCCCATGTTCTGAAAGGAGATGGGGGCTGGAGACTCCCTTTCTGTCTGTAG
Seq C2 exon
GTGCTGGAAGTGGGAACGAAGAGGAGAGCCCTCAGCAGGAAAGTTCTGGGGAGGAGATCATCCTGGGAGATCCGGCTCAGAGTCCAGAATCCAAGGACCCATCAGAGATGCCCCTGGAGAGCCCCTCCCAGGATGCCTCAGCCCCTCAGGATTCCCCAACCCCCCTGGGTTCTTCCCCCTTAGATCACCAGACCCCTATGGACCCATCAGCCCCCGAGGTAGTCCCTTCCCCGTCAGAGTGGACCAAGGCCTGTGAGACCAATTGGCAGTGGGGAACCCTCACCCCCTGGAACAGCACACCTGTAGTCACTGCCAGTGAACCCAGCCTGCGGGAGCTGGTGCAGGGACGCCCATCTGGGGCCGAGAAGCCATACATCTGCAACGAGTGTGGCAAGAGCTTTAGCCAGTGGTCCAAACTGCTGCGGCACCAGCGAATCCACACGGGGGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCGCACCTGGTGCAGCACCAGCGCACACACACAGGCGAGAAGCCTTACAAGTGCCCCGACTGTGGCAAGTGCTTCAGCTGGAGCTCCAATCTAGTGCAGCACCAGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCACGGAGTGCGAGAAAGCCTTCACACAAAGCACCAACCTCATCAAGCACCAGCGCTCCCACACCGGGGAGAAGCCCTACAAGTGTGGCGAGTGCCGACGTGCTTTCTACCGCAGCTCGGACCTCATCCAGCACCAGGCCACGCACACAGGTGAGAAGCCCTACAAGTGCCCGGAGTGCGGCAAGCGCTTTGGCCAGAATCATAACCTGCTCAAGCACCAGAAGATCCATGCAGGCGAGAAGCCCTATCGCTGCACCGAGTGCGGCAAGAGTTTCATCCAGAGCTCGGAGCTGACGCAGCACCAGCGCACACACACCGGGGAGAAGCCCTACGAGTGCCTGGAGTGTGGCAAGAGTTTCGGCCACAGCTCCACGCTCATCAAGCACCAGAGGACACATTTGCGCGAGGATCCCTTCAAGTGCCCCGTCTGTGGCAAGACCTTCACACTGAGTGCCACCCTGCTGCGCCATCAGCGCACGCACACGGGCGAGAGGCCCTACAAGTGCCCCGAGTGCGGGAAGAGCTTCAGTGTGAGCTCTAACCTCATCAACCACCAGCGTATCCACCGTGGGGAGAGGCCGTACATCTGCGCCGACTGCGGCAAAAGCTTTATCATGAGCTCCACTCTGATCCGCCACCAGCGCATCCACACCGGCGAGAAGCCCTATAAGTGCTCTGACTGTGGCAAGAGTTTCATTCGCAGCTCGCACCTCATCCAGCATCGCCGCACGCACACGGGCGAGAAGCCCTACAAGTGCCCGGAGTGTGGCAAGAGTTTCAGCCAGAGCTCCAACCTCATCACGCACGTCCGCACACACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTTCCTGGAGGCGCAAGAGCTGGAGCAGCACCGCGTGATCCACGAGAGAGGCAAGACACCTGCCCGGAGAGCTCAGGGTGACAGCTTGCTAGGGTTTGGGGATCCTGCCCTGATGACTCCGCCACCAGGAGCCAAACCTCACAAGTGTCTGGTCTGTGGAAAGGGCTTCAATGATGAAGGCATCTTCATGCAGCACCAGAGGATTCATATCGGAGAAAACCCCTACAAAAATGCAGATGGCCTCATAACACACCCAGCCCCCAAGCCTCAACAGTTACGCCCCTCCAGGCTCCCCTTTGGAGGCAATTCACACCCAGGTGCTTCAGAGAGCAGAGCTGACCCCCCAGGACAGCCCTCGAAAGTCCCCGAGAGTCAGGAGGGCTCAGGCCAAAGGCCAGGCCAACCCTCTCCTAAGTGCTATGTTTGTTCCCACTGTGGAGAAAGCTTCCTTGATAGGGCTGTGCTCCTGCAACATCAGCTCACTCACGGGAATGAAAAGCCCTTTCTCTTTCCTGAGTGTAGGACTGGCCGTGGGGAAGGGGCAGGACCCAGCCCCTTCCTAAACGCAAAGCCCTTTAAATGCCCAGAGTGCAAAAAAAGCTTTGGCCTCAGCTCTGAGCTGTTGCAGCACCAGAAAGTCCATGCGGGTGGGAAGTCCCAGAAGAGCTCTGAGCTGGGAAAGAGCTCTTCAGTCCTGCTGGAGCATCTCAGGAGCCCTTTGGGAGCCAGGCCCTACAGCTGCTCTGATTGTGGGGCCTCTTTCCTCGATCGACTAGCTCTTACACGACATCAGGAAACCCATACTCACGAAAGGGCCTCCACTCCTGAGGACACCCCTTCAGAGTCAGCCACATTGTCCACAAACCAGGAAGATGAGGGAGAGGCCTCTACCCCCCCAAAAAGCAGCAGCCACGGGGAAGAGGAAAGTCCCAAAACTGTTTCGGAGAAAAAGCCCTTTCTGTGCCCCGAGTGTGGAGATGGCTTCACGGAGGTTGCCACTCTCCTCCTCCATAGGAGCTGTCACCCAGGGGTCTCCCTGTGAAGTAGGTCTGGTGACCAGGGACCACTCTCTCCTGATAAATTTTGGGGAAAGGAGGCCAGCCCTATCAGATCATAGAGAAGTAGAGGGTCAAGAACCCTGGGAAGAAATAGTGAGTTTGCATCAGTGATAAGAAGCCTAAGAGATCGTGGGTGAGAACCACTTATAAGCCGTAGAGAAAAACTCCTGGGTTATAAGCCCTATAAATATGTAGGAAAAAAGCCCTTTAAGTCTGTAGCAGAGAAATCTTATAAACCATAGTGGGTAAAAGCCCTATTAAATGTAGAAAGAGGTTCTAACATGTCTGTAGACAACCCCATGAAACTGTATCAAACCCTTATCAGAATCCTCGAGTGGGGGAGGTATAGGGAACACAGCTCTACAGCTGGGCACTGACTTGTGAGGTGACCCTCAGATGACAGAGGAAACAGTCTTCCCAGTCAGTATTCCCTCCTGGCAGCCATGGAAGGAAAGTGCTCAGAGGGAATACAGGAATGCCGTAGAACTAGAAAAAGAAAAATGGGGGGAGAATGGCCAGGTGCTTCCAAACCCACAGGTGAAACAAGATGAGGAAAAGTGTCTCATCTTGTCACACTGGGGGCTCTTCGGGGGTACGAGGTCAATCCTGGGTGAATTGTATGTACTAGGGGAAGGAGGACTGGGGGTCCCTTATCAGTAAAGTTCCCCAAGTAGGAAAGAAACAAATATGGCAAGCCATTTTAAAGGCTGGAGTTTGGGGTGTATCAAAACCCTCAAGTGTAAGGATGCCGAGAAAACGCTGAGAGACCATCTCGGATCCTAGGGGAGGTTCCATTTATTTGAAGGGAAGCAACCCAGGGTGGAGAGACTGCAGATGGAAGACAGTCAGTTTCTCCTCCTTCCCGGGAGCTTGTTAAACTCCAAGTACAAGCACATCCCAGTTCGTGCTGTTTGGATTCTCCTCAGACAGGCAGGGCCAGCCTTTCCCCAGCCCAGCTGGAAATGTCTACTCTGAGAGGCCTCTGGGGTTGCAAGGGGCCTCTGCCACATTCTCAGGTCTCACAGGTTTAACCTGGAAGCTAACTGCCACAAGTCTTACTGCAGTGGCAACCCATTCCCTCGGATTCTGTCCTCAGTGGAGAGAGCCACTCGCTGCTAGTCAACTTCCAAAGAATAAATTCCTTCAGAGATTCAAGGCTTGTGTGTGCTTGTCCTCCCTAGCTGCCTGCAAGTCCACACGAGCCACTTGTGGGCGAGGAGGGACGGCAAGACGACAGTACAGACAGCTTTGACTTACCAGCACATGACTTAACCCTCAGCCTTTTGTGTGAGTTTGGTGTAAGAACGCCGGCAGGACAAGCCAGGCTGCCCGTGGTGGATGTCCTGACACGGCACAGACTGGACCAGCCTCCTGAAGAGGCAAATGGATACTCGACCACCTTCCTCACTCCCAGTGCTTGGATGCCCCTGAGAGGCCAGATTTGATTTTGGCTCCGGAAAGGGACCTATTCCACCCGATCCCTTTGGCCTCTCTCTCAGCCAGAAACTTGTGAAGGGAAATGAAAGCAAAAGAAATGCCCCCCTACCAGGCCTATCTCCTCCTCAGACACAGCAGACTGGACAGGTCAGTAGCGGAACTTGCTCATGGAACTGGAGCTGTGTGATGGAGCAGGGGTCTTGCCATATAATGTGTTGAAGAAAAACTTTGTTGAGAAACATCTGTAACAAAGACCCTTAAAGATGGGGAGGATTTTCCCTGGTACTTGCCAAGGGAATGTCCTCAGCCTGTTGCTGGCACTAGTGACTCAATGTCCAAAGAAGCAAGATGTAGACTCCAAATGATATATATGGCTCTTTAGGAATCCTGTGCCCAGAAGGGTGGCCTGGATTCCTACAAAGCTGGGGAAGAGACCTCTAATTCCATTACCTAAAAGTTCAAAAAGTAGAGAGACCCATCACCCTTCATCTGTCCTGTCCCCAAAGGGATGACCCTCAAAATTTAAAGGACCAAAATCTAGAATACTGGGAGAGAAAAAAAATCCCAGGCCTCCTGGGGAGAGAGAGAAGGCATGTCTTAGACAATTACAGAGACAGCCTTGCTGAAGTCCTGAGTGCCAGGAGAGGGGCCCCATGGAGACGAGGAGGAGTCTGTCTGTATATTGACAGAAATGTTGATAAAGGGGGTATCCCTATACAATGTAGATACTCTCCTAAGGATAAGCTGATTTGTCCCCTTCTAAGATGGTAGCAGAAACTAGAGAGAAATCCTTTGTAAAACTAGGAACAGATTCCCTCAGACACAGGTCTGAACCCGTGTCATCAGAAGAGTGCTGGAGGGGAGGTGGTCAGTGATGTCATGCTGACTACAAACTACGGAGGACTAAGATGGAGCCTGTGGGATAGGATGCTCTCGTGTTCTGCAGACAGTGGGGGCTATGCTCCTGATTCCAGTACTGAATGGACCTTGTAGCTAGGTTCCTGGGCTTCCTAGTAGGAAAGAGGGCAGAGCAGAGACCTTGTGGTGAGACCTGTTCTTTTAGCCAACCCTCTCTCAGTTCCAGCTATACCACAGGACGACCTAACTGGCTCAGGAAAAGGTCCACCAGAATTAAGCCTGGAAGGCACAATGGAGTCGACTCTGTCCTGGACCGAGAGCCCTCAGAAGTGCCCTTGGGTAAGAGCCCAGCAACCATAGACAAAGGAGTGCAAACACAGGGGGGTGGAGCTGATCTGCACTTAAGGTGAGACTTAGAACTGATGTTGAGTATAGGTAGGAACTCTTAAAGGAACTGGGTATGAGTCATGAGTCGGGGTGAGGATTTGAAACCATCATGACACCCCCACGCCAGTCTGAAGTGGATGGCTCTCAGAAGCCTTTGCCCCCACAAAGGAAGCCCCGCTCACCCCACTTGTCCCCATGGGGTGAAGGGAAATCCTGTTTTTGAGTGTTGTGTGTCAGTAACAGTGTTGTGTCACCGTGGTCATGTTGAATAGTTGAAGAGAATAAAGGGAATAAGATTTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045639:ENSMUST00000084564:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF051298=Elf1=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF082717=TF_Zn_Ribbon=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.1),PF0009621=zf-C2H2=WD(100=2.7),PF0009621=zf-C2H2=WD(100=2.7),PF0009621=zf-C2H2=WD(100=3.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCTGAAGAGAGCCAGAA
R:
TGATGGGTCCATAGGGGTCTG
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types