BtaINT0165863 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026307 | ZNF629
Description
zinc finger protein 629 [Source:HGNC Symbol;Acc:HGNC:29008]
Coordinates
chr25:27159691-27162487:-
Coord C1 exon
chr25:27162380-27162487
Coord A exon
chr25:27162225-27162379
Coord C2 exon
chr25:27159691-27162224
Length
155 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GACTCCCTTTCTCTCTGTAGGTG
3' ss Score
12.02
Exon sequences
Seq C1 exon
GGTCCCTGGAGCACTGGACAGCCCTGAGTTCCGGGATGGAACCTGAGACGGCGCTCTGGGGCCCAGATCTGCAGGATCCTGGACAGAGCCCGGACGATGGTCACCCAG
Seq A exon
GTGAGGGACACAAGAAGGGACGGCGGTCCTGAGGAGAGAGTGGCCCCATTTAGGGAGGGGCGCAGGCTCTGGGAGAAACCCCGGGAGGAGGGAAGTGAGGCCTGCCCCCGATTCTGAAAGGAGATGGGGGCTGGAGACTCCCTTTCTCTCTGTAG
Seq C2 exon
GTGCAGAGAGTGGGAACGAAGAGGAGAGCACTCAGCATGAAAGTTCTGGGGAGGAGGTCATCTTGGGAGATCCAGATCAGAGCCCAGAATTCAAGGACCCATCAGAGATGCCCCTGGAGACACCCTCCCAGGATGCCTCTGGCCCCCAGGATGCCCCGGCCCCGCTGGGTCACGCCAACCCCTCGGACCACCAGACCCCTCTGGACACCCCCTCCCCCGAGGTAGTCCCGACCCCGTCAGACTGGACCAAGGCCTGTGAGGCCAGTTGGCAGTGGGGGACTCTGACCACCTGGAACAGCCCCCCGGTGGTCCCGGCCAATGAGCCCAGCCTGCGGGAGCTAGTGCAAGGCCGCCCGGCCGGCGCCGAGAAGCCCTACATTTGCAATGAGTGCGGCAAGAGCTTCAGCCAGTGGTCCAAGCTGCTGCGGCACCAGCGCATCCACACGGGTGAGCGGCCCAACACCTGCTCCGAGTGCGGGAAGAGCTTCACGCAGAGCTCGCACCTGGTGCAGCACCAGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCCCCGACTGCGGCAAGTGCTTCAGCTGGAGCTCCAACCTGGTGCAACACCAGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCACCGAGTGCGAGAAGGCCTTCACCCAGAGCACCAACCTCATCAAGCACCAGCGCTCGCACACAGGCGAGAAGCCCTACAAGTGCGGCGAGTGCCGGCGGGCCTTCTACCGCAGCTCGGACCTCATCCAGCACCAGGCCACCCACACGGGCGAGAAGCCCTACAAGTGCCCCGAGTGCGGCAAGCGCTTCGGCCAGAACCACAACCTCCTCAAGCACCAGAAGATCCACGCCGGTGAGAAGCCCTACCGCTGCACCGAGTGCGGCAAGAGCTTCATCCAGAGCTCGGAGCTCACCCAGCACCAGCGCACGCACACGGGCGAGAAGCCCTACGAATGCCTGGAGTGCGGCAAGAGCTTCGGCCACAGCTCCACGCTCATCAAGCACCAGCGGACTCACCTGCGCGAGGACCCCTTCAAGTGCCCGGTGTGCGGCAAGACCTTCACGCTGAGCGCCACGCTGCTGCGGCACCAGCGCACGCACACGGGCGAGCGGCCCTACAAGTGCCCTGAGTGCGGCAAGAGCTTCAGTGTCAGCTCCAACCTCATCAACCACCAGCGCATCCACCGCGGCGAGCGGCCCTACATCTGTGCCGACTGCGGCAAGAGCTTCATCATGAGCTCCACCCTCATCCGCCACCAGCGCATCCACACGGGCGAGAAGCCCTACAAGTGCTCCGACTGCGGCAAGAGCTTCATCCGTAGCTCGCACCTGATCCAGCACCGGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCCCTGAGTGCGGCAAGAGCTTCAGCCAGAGCTCCAACCTCATCACGCATGTGCGCACGCACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGGAAGGCCTTCTTGGAGGCGCACGAGCTGGAGCAGCATCGGGTGATCCACGAGAGGGGCAAGACCCCGGCCCGAAGAGCTCAGGGCGACGGCCTCCTGGGGCTCGGGGACCCTGCCCTGCTGACCCCACCCCCCGGAGCCAAACCCCACAAGTGTCTGGTTTGCGGGAAGGGGTTCAACGACGAGGGCATATTCATGCAGCATCAGAGGATCCATATTGGCGAAAACCCCTACAAAAATTCGGACGGCCTCCCTGCCCACCCCGCCCCCAAGCCGCCTCAGTTCCGGTCCCCCAGGCTCCCTTTTGGGGGGAATTCCTTTCCCGGTGCTGCGGAGGGCAGAGCCGACCCGCCTGGACAGCCCTTTAAAATGCCCGACGGGCAGGAGAGTTTCAGCCACAGGCTGGGGCTGCCCTCCTCCAAGTCCTACATCTGTTCGCACTGTGGCGAGAGCTTTCTGGATCGCTCGGTGCTCCTCCAGCATCAGGTCACCCACGGCAACGAAAAGCCCTATCTCTTTCCCGATTATCGGATTGGCCTCGGGGAAGGGGCGGGGCCCAGTCCCTTCCTCAGTGGAAAGCCCTTTAAATGCCCCGAATGCAAAAAAAGCTTTGCCCTCAGCTCAGAGCTGCTGCTGCACCAGAAAGTTCATGCCGGCGGGAAAGCCCAGAAGAGTCCAGAGCTGGGGAAGAGCTCCTCCGTCCTCCTGGAGCATCTCAGGAGCCCCCTGGGGGCCAGACCCTACAGCTGCTCAGATTGTGGGGCCTCCTTCCTCGATCGCCTGGCTCTCATCCGGCACCAGGAGACCCATACTCAAGAAAAGTCCCCCATACCCGAGGACCCCCTCCCAGAGCCAGCCACCCTGTCCACAAGCCAGGAAGGTGAGGGAGAGGCCCCCGCACCCACAGAGAGCAGCAGCCATGAGGAAGGGGGAAGCCCCAAAACCAGCTTGGAAGAAAAGCCCTATTTGTGCCCCGAGTGTGGAGATGGCTTCACAGAAGTCTCAGCCCTCCTCCTCCATAGGAGCTGCCACCCCGGGGTCACCCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026307:ENSBTAT00000037326:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF051298=Elf1=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF082717=TF_Zn_Ribbon=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.1),PF0009621=zf-C2H2=WD(100=2.7),PF0009621=zf-C2H2=WD(100=2.7),PF0009621=zf-C2H2=WD(100=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGGATCCTGGACAGAG
R:
CAGAGGGGTCTGGTGGTCC
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]