GgaINT1003866 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C5A9]
Coordinates
chr6:16738368-16739543:-
Coord C1 exon
chr6:16739394-16739543
Coord A exon
chr6:16738529-16739393
Coord C2 exon
chr6:16738368-16738528
Length
865 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
TTGTTTATTTTATGTTGCAGAGA
3' ss Score
9.58
Exon sequences
Seq C1 exon
GCATTGTGACCAGCAATGGGGAGAGCTGGAGGCAAATGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCGTTTTCTGGTGGAGAGGATCAGAAACACACACG
Seq A exon
GTAGGATATTGACATGTATGTACTGGGAAACCTTGCACATCTGCACGGAGAAAGACAGCAAGGGGTGCACCACTGTTTCATCAAATCTTTGACCCAGGAAGTGAGCATACATAGAATTGCCAAGGTTGGAAAAGACCCACAGGATCATCCAGTCCAACCATCCACCCATCACCAATGGTTCTCGCTAAACCGTGTCCCTCAACACAACATCCAAATGTTCTTTGAACACCTCCAGGGTCAGTCACTCCACCACCTCTCTGGGCAGCCCATTCCAGTGCCTGACCACCCCTTCAGAGAAGTAGTATTTCCTAACATCCAGCCTGAATATACAGCTCCAGTTTCTGCTATTTTAAACTACACATGCATTTCTGGTAGGATGTAAACTACTATTTCTTTTAAGCACCTCCCGAGACTGGTAATACCCTGGACACTAAGCTTCCTTTCCATAGACAGCCTTCATGTGTGATGTTCTGCAAGGAGGGAAAAAACAGATGGATCCAATAGGATGCCAAAGTACTACTGTCCTCCATGAGCCACTAGAAAATTCAGAGTGGATTCACACATAAATATCCCTGGTACAACCAATCTGAGAAAACGTGCTCACCTGCTTTGCTCTTCTCCTGTCAATAACACTGCACTGCCAAGCCTCCATATCCAGGACAGGGACTTAAACAATTCAAACAGGAAAATCAATTAATTACAAGTAGAGAAGAACCATTTGGATAAGCCACTCACTATCTTCTTAAAGGACTAGAAAAATCTGGGGCTCAAGTGGATACAAAACTTTCACATAGGTATCAGGGTAGGAGATGATGACTGAAATACTGAAAGCAAGCTACTTTTTTTTGTTTATTTTATGTTGCAG
Seq C2 exon
AGAAACCTTTCAATCCTACTGTGTTTTTAATGCATGCTGTTTCCAACATAATCTGTTCCACTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGACGAAAACGAAAGGTACCAGAACAGAATACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026793:ENSGALT00000009308:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.1=100)
A:
NA
C2:
PF0006717=p450=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGACCAGCAATGGGGA
R:
CTGTGTTTGTATTCTGTTCTGGTACC
Band lengths:
310-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]