GgaINT1003867 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C5A9]
Coordinates
chr6:16737779-16738528:-
Coord C1 exon
chr6:16738368-16738528
Coord A exon
chr6:16737956-16738367
Coord C2 exon
chr6:16737779-16737955
Length
412 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CCTTCCTTTTATTTTTACAGCTC
3' ss Score
11.21
Exon sequences
Seq C1 exon
AGAAACCTTTCAATCCTACTGTGTTTTTAATGCATGCTGTTTCCAACATAATCTGTTCCACTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGACGAAAACGAAAGGTACCAGAACAGAATACAAACACAG
Seq A exon
GTTTGTGCAGTTTCATTGCATTAATAAACATACTAATGATTCTGGTTTTAAAATGAATATGTATTCATGTTATAAATTTTTAATTGGTATGAACTTCCCTAAACATGAAAATGAATTTTGAAGGCCACAAAGTCGGTTACATAGCCAATTCCTATTGTGCTTATTTTTTTCTTTAAAACTTTCTGTACTTCCAGCTGCATGCCCAAGAAAGGATATAATTGCTAAAGCAGCTTACATTATGTCATTGTTTGAGTATAGTGAAGCCATGATGTAAAAGACATTAAAATCCAATTGAATAATATAGACCTACATTTCCAAAACGGTTCACACCTTCTCATAGTAAGAGTTAGGGGAGCAATTTATAGTAAGCACTTTAACCAAAATATGCTTTTCCTTCCTTTTATTTTTACAG
Seq C2 exon
CTCTACAATTTCTTCCCAACCATCCTGGATTATTTGCCTGGCCCTCATAAAACACTAATAAAAAGCATTGAAACCGTTGATGACTTCATTACTGAAATCATAAGAGCACACCAGGAATCCTTCGATCCCAGCTGCCCTCGAGATTTTATTGATGCTTTCATTAACAAAATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026793:ENSGALT00000009308:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.0=100)
A:
NA
C2:
PF0006717=p450=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCTTTCAATCCTACTGTGT
R:
TGTTGCATTTTGTTAATGAAAGCA
Band lengths:
337-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]