BtaINT0005183 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6N4]
Coordinates
chr26:16258291-16259901:+
Coord C1 exon
chr26:16258291-16258451
Coord A exon
chr26:16258452-16259724
Coord C2 exon
chr26:16259725-16259901
Length
1273 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACAGTTGTTTCTCTCCTAGGTT
3' ss Score
8.22
Exon sequences
Seq C1 exon
GGTTGCCCTGTGACCCCACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAGAACCGTTTTGATTATAAAGATCCAGTTTTTCTAGATCTAATGGAAAGATTGAACGAAATCCTCAGGATTCTGAGCTCTCCATGGGTTCAG
Seq A exon
GTGAGGCCCAGGTCCTTTCTTCTCTGGGAATCATTTCTGCTCTTTACTCCATGAGGTCCAGACACACCAAGATGTGAGGTGAATGTGTGAAAAGCACAGTCCTGCCCAGAGCTTAGCATCATGGAAGGCTCATCTGGGGATGATGGTGGAGCCCTTTAATGATAGACAGGAAAATTCATGCCCAGAATACAGAACTGTAATTCAGTCCTATTGACACTGTTCAGTGGTTTTCCCACCAATTTCCAAAGCCACTTTCCATAAACTATTTTGGTAGCTTCCCCAAAACATGCCTACAGCAGTAGAAGGACTTCCATGTCCTTCTGGAAAAGCTTCCATTGCCCACAAGCCTTTTCACCCAGTCACCACTTAAGGACTTCTTCAGCACATTAAGTTGGCAGAAATATCTGTGTTTGGAAAGAAAAAGAATGTCTCCTTCAAGGGGGAGAGTACTGCCAGGGGACACTGACTAGGATAGGAGTGTTTGGTGCTTCAGCTGGCATCTTAACTGACAAGGTAATTGCTTTGGGGATGACAAAGGTGATTGGGGTTGTTTGGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCAACAACAATCTCATCACCTTTGCTGAGCTGACATGTTCTGCCCTCTACCTAAAAGACAATGATGTGACCTTGCAGAGGTCACTTAATTGCTCTGGGGACCAGTGACTTTATCGCATTGAGTTAAGTTTCATGGTTTTTAGTATTATTTCAGTCCTGAAATATGATCTTATGTTTGAGTCTATGAGAGAGCAGTAGAAACATCAGAGACCAGCCCTGAGCTGTATATCAGATTGTCCAAACTCTCTTAACCTCTGTTGTTTGTCATCTACAAAATATGAGTCATAGTATTTCATGCCATCCCATATTTCATGATAGAAGGGAAGAGTTGATATAAGAAAATGAGATAACTTTTATAACAGTGCTTTTATACTATACATATAATATATGATTATAGGAAATGATTATCATATTTGATACCTGGTCAGAATGTTCTCCCTCATATATATCTATCAGTATAGCAAATTATGTACCTGTAAGATAAGAATTTCCCTCAATACAGAGACCATATTATATTAATACTTATAATACCATTTCTGACAAGGTTTTGGCATATGGTATAGAAGTATTATTAAAGTGATCTTCATTAATAAACAGTTGTTTCTCTCCTAG
Seq C2 exon
GTTTGCAATAATTTCCCCGCACTCTTTGATTATTTACCAGGAAGTCATAACAAAGTACTTAAAAATGTTGCTAATTTAAAAAGTTTTGTGTTGGAGAAAGCAATGGAACACAAAGCATCCCTGGATATTAACAACCCTCGGGACTATATTGATTGTTTCCTAATCAGAATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023955:ENSBTAT00000007005:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTGACCCCACTTTCAT
R:
CTGCTCCATTCTGATTAGGAAACA
Band lengths:
334-1607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]