MmuINT0045032 @ mm10
Intron Retention
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:26814131-26814801:+
Coord C1 exon
chr7:26814131-26814291
Coord A exon
chr7:26814292-26814624
Coord C2 exon
chr7:26814625-26814801
Length
333 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTTT
5' ss Score
2.28
3' ss Seq
CCTTTACCTCTGCCCTGCAGTTA
3' ss Score
7.91
Exon sequences
Seq C1 exon
GAGCTCCCATAGATCCCACCTTATACCTGAGCCGCACTGTGTCCAACGTCATCTGTTCCGTGGTCTTCGGAAAACGCTTCGACTATCAGGACCAGCGTTTCCAGAGCCTCATGAGGATGATCAATGAGAGCTTTGTGGAGATGAGCAAGCCCTGGGCACAG
Seq A exon
GTGTTTACTAGTCACTAGGCAACTCCCCGTACACCCTTCATTCTCAAAGCAAGCACATTCCTGTACTTTACCTAGCCCTCCTCCCTTCATCCCTTGGAGGCCCTTAAATTTGTCCAAGTATTCAAGAAGCAAACAGTAACACCCAAAGCTCAGGCCCATAGGGTGACTTTGTGTAGCTCAGGCTGGCCTTGAACTGCTGATCCCTCCTCCTCAGGCTTCCTTGTGCTGTAATTAAGAGTGTGTCCTAGCTCCAGCTCAATGGCATTAGAACTTTGCCCATCTGGTCCCTGATGCCCATGACTGACACATGCCCCCTTTACCTCTGCCCTGCAG
Seq C2 exon
TTATATGATATGTACTGGAAAGTCATGCAGTATTTTCCAGGAAGACACAACTACCTCTACAACTTGATAGAAGACCTTAAGGACTTCATTGCATCCAGGGTCAAAATCAATGAAGCATCCTTTGACCCCTCAAACCCTAGGGACTTCATAGATTGCTTTCTCATCAAGATGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685:ENSMUST00000040944:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCCATAGATCCCACCT
R:
TGGTGCATCTTGATGAGAAAGCA
Band lengths:
337-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types