DreINT0054321 @ danRer10
Intron Retention
Gene
ENSDARG00000101423 | cyp2y3
Description
cytochrome P450, family 2, subfamily Y, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-050522-490]
Coordinates
chr15:101471-102058:-
Coord C1 exon
chr15:101898-102058
Coord A exon
chr15:101648-101897
Coord C2 exon
chr15:101471-101647
Length
250 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGATCTGATTCCCAACAGCTC
3' ss Score
9.13
Exon sequences
Seq C1 exon
CCAAACCAGTTGATCCAACATTCTTCTTTAGTCGGACTGTGTCCAACGTCATCTGCTCTCTGGTGTTTGGGCAGCGCTTTGATTATGAAGACAAAAACTTCCTGCAGTTGCTCCAGATCATCTCCAAACTACTGCGATTTTTAAGCAGCCCTTGGGGACAG
Seq A exon
GTGAGACCGTGTAACTGCTTGTAACTATGTTTGTATGCTTTCAACACCTTAGCCTTCAGTATTAAACAATATAGACAGAGAATTGGCAAATGTGTTTCTCTAACATCTCCATCACTGTAATTTTCACTTCCTTATTTGACAAGCCTGATTGAGCTCTAAACAAAGAGAGTCACAGAAGAGAGCTACAGCCTAGAGTGTAAATAAAGGTCCAGAAATGTCCTTACCTTACCTGTGATCTGATTCCCAACAG
Seq C2 exon
CTCTACAACATCTTCCCCCAAGTAATGGAAAGCTTTTCTAGTAGACATCACGCCATCTTAAAAGACGTAGAAAACATCCGGACCTTCATTAGGAACAAAGTTAAGGAACATGAACAGAGATTAGACTTCAGTGACCCAAGTGATTTTATTGACTGCTTCCTTATCAGACTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101423:ENSDART00000164323:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTCCAACGTCATCTGC
R:
GTGAGTCTGATAAGGAAGCAGTCA
Band lengths:
299-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]