BtaINT0010144 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50420455-50422133:-
Coord C1 exon
chr18:50421973-50422133
Coord A exon
chr18:50420632-50421972
Coord C2 exon
chr18:50420455-50420631
Length
1341 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTCCCCTCCCCATCCTCAGCTC
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCGCCTTCATCGATCCCACCTTCTTCCTGAGCCGAACGGTCTCCAATGTCATCAGCTCCATTGTCTTCGGGGACCGCTTTGACTACGAGGACAAAGAGTTCTTGTCACTACTGCGAATGATGCTGGGAAGCTTCCAGTTCACCGCTACGTCTACCGGGCAG
Seq A exon
GTAACCCGAGTCGACCTGGCTCTACCCTGCCCCTACGGCAACCTGCCTATTCCCCCGCCCCCGCACCCCACCCCCCCACACACACAAACACGAGACAGGTGCCCCAAATTCCCATCCTCCCCCAGACAGGGTCCCCTCAAAACCAGACCACCACTCTTGGACAACTCAACAGTGGCACCAGAGCCCAATACTCATTCTCCAAGGACACCTGGATATCTCAAAAGATGCACCCTCCACCAAAAAAGAAGAAAGAAGAAAAAAACCCTGAAGAAAAGATACATGTCCTCAACCCAGCTTTCTTACAAGACAGGTGTCCTCATCCCAGCTTATCTTACTGTACAACAAGTGGTCCCTTTTTAGACACTCCATCTCAAAAAAGGGGAGGGGACCTCTTGGTAGTCCAGTGGTTCCGACTCTGCACTTCCAATGCAGGAGGCATGGGTTCGATCCCTGGTTGGGGAACTAAGATCCCACATGCTGCTTGGCGTGGCAAAAAAAAGAAAAGATATTTTCTTTCCATCTGAATTTCTTAACACCTGGCAAGTGGTCACCTCAGCCTACTTCCTGACTACCTGGACACCTGGTGCTTCAAAATTCAGCCCACCAAAATCATTGGCTATCCACACAGATGTCCCAAACCAGCCCACTGGAATCTCCAGAGAGTGCCTCCTCCCCAGTTCACTTAAATAGCTGAACATGTAGACAGGTACCCCAACCAAGACCCCTAAATGCATAAACACCTAGGTAGATTGTTCCCCACACACCCAAATAAGTGTCCCCTGATCCAACTCATTTCCAGCACCTACAGAAGTGCCCTCCATTGGCCCATATGAATATCTGAACACCTGAACAGGTATCTCCCCACCTTAACACCTGCACCCCAACTCCACTTTAGTACCTCAACACTTGCACAGAAACCCCAACCCAGACCCCCTAAACATCTGGGCAGTTGTGTCCATCTGAGACCACACCAATGCCTAAACACTTAGACAGGTGACCAACCCCTATACAAGTCCCGCCTAAATAGCTAAACACCTGGACAGGTGTCTCCCAACCCAACCTCATCTGAATATATGAACCCCGGGTGTGTTTCTCCAATCCAACATCATCTGAATATCTGAATATGCATCCCAGTCCATCTCCCTGTAATCCTTGGACAGGGGCCCTCACACATAACTCATTGTGAAAACACATGCCCATCCAGCCTCATCAAAATATGTAAACATCTGGGCAGGTGCCTGTAACCCAGTACCTGCCTTGCCCTGAGACAGGGCCCACTCCCACCAGGTCCTGCACACTGACAGCCATCCTTCCCTCCCCTTCTCCCCTCCCCATCCTCAG
Seq C2 exon
CTCTACGAGATGTTCTACTCAGTGATGAAATATCTGCCAGGGCCACAGCAACAGGCCTTTAAGGAGCTGCAGGGACTGGAGGACTTCATAGCCAAGAAGGTGGAACAAAACCAGCGCACGCTGGACCCCAACTCCCCACGGGACTTCATCGACTCCTTCCTCATCCGCATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.1=100)
A:
NA
C2:
PF0006717=p450=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCATCGATCCCACCTTC
R:
CCTGCATGCGGATGAGGAAG
Band lengths:
334-1675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development