GgaINT0042919 @ galGal3
Intron Retention
Gene
ENSGALG00000023925 | Q8QFT4_CHICK
Description
NA
Coordinates
chr6:17659804-17660585:+
Coord C1 exon
chr6:17659804-17659964
Coord A exon
chr6:17659965-17660408
Coord C2 exon
chr6:17660409-17660585
Length
444 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TTCTGTTTCTTTCCTGCCAGTTA
3' ss Score
9.68
Exon sequences
Seq C1 exon
GACTGCCCTTTGACCCAACATTCAAGCTGAGCTGCGCTGTCTCCAACGTCATATGCTCCATTGTCTTTGGGAAGCGATATGACTATAAAGACAAGAAGTTCCTATCTCTGATGAACAACATGAACAACACATTTGAGATGATGAACTCCCGCTGGGGACAG
Seq A exon
GTACCTTCAGCAGATATTTCAGAGTGGGAACATTTTGCCAGGGGAGCAGGAGGCCTCCCTCACAGGGAAGTTGGACTCGATGATGCTTGTGGGTCCCTTCCAACTTGGGATATTGTGTGATTCTGTCATACTCCACTGTAGGCCCCATCAGCTCTCAAGCGCAGAAAAGGGAATACCTTCAATACAAAGAAGGTATTATGCCGTTACAGCCCCATGGCATGGGTACTGAAACTAGATGATTTTGAAGACCCTCCCAAAACATTTAATAACTCTAAGAATTCATATTGTGACCAAGCAGGTCTGCACCATCCTATTGGACTGCCCAGCCAAACAGCCCATCTGCTTGATTCTGTTGGGGGGGGTTGAACCTGCCTAAGCTTTTGGCTAATCACTAAGAATAGGGCAATGCTCGTACTGGGGACCTTTCTGTTTCTTTCCTGCCAG
Seq C2 exon
TTATACCAGATGTTCTCCTACGTTCTGGATTATTTGCCCGGCCCACATAACAATATATTCAAAGAAATTGATGCTGTAAAAGCCTTTGTGGCAGAAGAGGTAAAGCTGCACCAAGCCTCCCTGGATCCCAGCGCTCCCCAGGATTTCATTGACTGCTTCCTCAGCAAAATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023925:ENSGALT00000008787:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(18.2=100)
A:
NA
C2:
PF0006717=p450=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCCCTTTGACCCAACAT
R:
CTCCTGCATTTTGCTGAGGAAG
Band lengths:
338-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]