HsaINT0044223 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:41384665-41386149:-
Coord C1 exon
chr19:41385989-41386149
Coord A exon
chr19:41384842-41385988
Coord C2 exon
chr19:41384665-41384841
Length
1147 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TCCTCTCTCTGCAACCCCAGCTC
3' ss Score
5.28
Exon sequences
Seq C1 exon
GCGCCAATATCGATCCCACCTTCTTCCTGAGCCGCACAGTCTCCAATGTCATCAGCTCCATTGTCTTTGGGGACCGCTTTGACTATGAGGACAAAGAGTTCCTGTCACTGCTGAGCATGATGCTAGGAATCTTCCAGTTCACGTCAACCTCCACGGGGCAG
Seq A exon
GTAACTGGCTGCAGCCCGGCCCGTGACGCCCCTACCACAACCTGCCAACTGCTCCCCTACCTGGAGACAGGTGCCCCAAACTCCCACCCCGCTCCAGACAGTGTCCCCTCAAAATCAGCCCCCGATATTGGACAACTGGACAGTTGCACCAGAAGCCTGTCTCCAAGGACACCTGGATAGCTCAACAGATGCTCCCCAAAACAGAGCCTGCTGGTAGGATACATACCCTCAGCTCAGCTCTCTCACCTGGGCACGTGTTCCCATCCCCAACTTACCGTAATTTCTAACAGATGCTCCCTACCCAGTTCTTCTGAATATTTTAACACCTGGACAAATGACTGCGTCAACCCGCCTCCTGCATGCCTGAACACCTGGTGCTGCAAAATCCAGCCCATCATAATCATTTCACATCTACACAAATGTCCCAGATTAGCCCACTGGAATATCTGGCCAAGCGCCCTCTACTTCACCCACTTAAATGCCTGAAAACATGGACAGCTGCCCTAACCAACACCTTAAACACACAAATATCTAGACAGATTGTTCCCTGACACACAAATAAGTGTTCCCCAACCCTTTCCAATCACACACCTTACAGAGGTGCTCCCTGTGCATCGCACTTGGATAGGTAAACACCTCAACAGGTATCCCCTGCACTTCAACATCTTCACCAGCCCCACTTTAATACCTGAACACCTGAACAAAAGCCCCCAATCCAGACCCAGTAAGTATCTGGACAGCTGTCTCCAACCAAGCCTACTTGAATGCCTAAATACCTAGACAGGTGACACTCACCTCATACCAGCCCCACCTGAAGAGCTAAACACCTGGACAGGTGTCTTCCAACTCAACTTCACTTGAATATCTGAACACCTAGATGTGTGCTCCAATCCAGCCTCATTTGCATACCTGAAACCTGGATATATGCCTCAGTTCTTCTCACCTAAATTACTAGACCGTGGCCCTGGTACCTAACCTTCCTGAAAACTTAGATATAAGTTCCTATCCGACCCCACTGAAATACCTAAACAATGAGACAGATGCCTTTAACTCAGTTCCTTCCTTGCTATGAAACAAATCCCATTCCCATCAGCTCCTGCCCCGTGACAGCTGTCCTTCCCTTCCCATCCTCTCTCTGCAACCCCAG
Seq C2 exon
CTCTATGAGATGTTCTCTTCGGTGATGAAACACCTGCCAGGACCACAGCAACAGGCCTTTAAGTTGCTGCAAGGGCTGGAGGACTTCATAGCCAAGAAGGTGGAGCACAACCAGCGCACGCTGGATCCCAATTCCCCACAGGACTTCATCGACTCCTTTCTCATCCACATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
-CYP2A7:NM_030589:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAATATCGATCCCACCTT
R:
CCTGCATGTGGATGAGAAAGGA
Band lengths:
335-1482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)