RnoINT0044381 @ rn6
Intron Retention
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83631892-83632601:+
Coord C1 exon
chr1:83631892-83632052
Coord A exon
chr1:83632053-83632424
Coord C2 exon
chr1:83632425-83632601
Length
372 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
CCTTTGCCTCTGCCCTGCAGTTA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GAGCTCCCATAGATCCCACCTTCTACCTGAGTCGCACTGTGTCCAATGTCATCTGTTCCGTCGTCTTTGGAAAACGTTTCGACTATGAGGACCAGCGTTTCCGGAGCCTCATGAAGATGATCAATGAGAGCTTTGTGGAGATGAGCATGCCCTGGGCACAG
Seq A exon
GTGCTTACTAGTCAGGAGGCAACTCCCTGCCCACCCTTCATTCTCAAAGCAAGCACATTCCCGAACTCTACATAGCCCTCCTCCCTTCATCCCCTGAAGGCACTTACAATTTGTCCAAGTATTCAGGAAGCAAACAGTAACAACCAAATCTCAGGCCCAACAGTAGATTATTTAGTGAGATAGGGTGTCTTGGTGTAGCTTAGGCCTGCCTTCAACTGCTGATCTCTCCCCTTAGTCTCCCTTGTGCTGGAATTAAGACTGTGCCCTAGCTCCAGCCATAGACTTTAAGCCAGCTCAATGACTTTAGAATTCGGCCCATCTGGTCTTTAATGCCCATGACTGACACATGCCCCCTTTGCCTCTGCCCTGCAG
Seq C2 exon
TTATATGATATGTACTGGGGAGTCATACAGTATTTTCCAGGAAGACACAACCGCCTCTACAACTTGATAGAAGAGCTTAAGGACTTCATTGCTTCCAGGGTCAAGATCAATGAAGCATCCTTTGACCCCTCAAATCCTAGGGACTTCATCGACTGCTTTCTTATTAAGATGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827:ENSRNOT00000028261:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCCATAGATCCCACCT
R:
GGTACATCTTAATAAGAAAGCAGTCG
Band lengths:
336-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]