GgaINT1004030 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFI8]
Coordinates
chr21:6522721-6524183:-
Coord C1 exon
chr21:6524047-6524183
Coord A exon
chr21:6522867-6524046
Coord C2 exon
chr21:6522721-6522866
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
3' ss Seq
AACACCCCCCCTACTGCCAGCGG
3' ss Score
5.46
Exon sequences
Seq C1 exon
GAATGACATCGCCCTGCTGAAACTGCGGCGCAATGCTGTGCTCAACGACTACGTGCAGACAGGGCGGCTGCCGCCCGCGGGCACCGTGCTGCCCAATGGCTACCCCTGCTACCTGAGCGGATGGGGGAGGCTGACCA
Seq A exon
GTGCGTCCCGGGATGGCGGGGAGGGCGGGGGGTGAGGGGAGGGTATGGGCGTGGAGGGAACGGTGAGGGGTGGAGGGAAGGATGGGAGGCCGGTTGGAAGGGTGATGGATGGATGTGGGATATGGGGATGGATGTGGAATGGATGATGGATGGGTGGTGGATGGATGTGGGATGGGTATGGGGTGGATGTGGGATGGGTGGATGGATGGATAGATGGGTGGTGGATGGATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTATGGTAAGGGTGATGGATCACTGGAACAGGTTGCCCAGAGAGGTTGTGGAGTCTCCTATGGAGATATTCAAGACCTGTCTGGATGCCAACCTGTGCAACCTATTGTAGGGAACCTGCTTCAGCAGGATTGAACTTGATGATCACTTGAGGTCCCTTCCAACCCCTGTGATTCTCTGACTCTGTGTGGGATGGATATGCAATGAACATGGGTTGTGGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGGCATGGAATGGACGTGGAATAGATGTGGGATGGCTGTGGGATGGCGGAGGCTGGCGAGCATGATGCTGGGCACAGTGTTGTCCACCTGGGTTCCTAACACCCCCCCTACTGCCAG
Seq C2 exon
CGGGGGGACCATTGCCAGACAAACTTCAGGACGCTCTGATGCCTGTGGTGGACCATGAGCAGTGCACACAGCCCGACTGGTGGGGCAGCCTTGCCATCCGCACCACGATGATCTGTGCCGGCGGCGCCGAGCAGGCCGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027189:ENSGALT00000043604:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGACATCGCCCTGCTGAA
R:
CACAGATCATCGTGGTGCGG
Band lengths:
254-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]