BtaINT0036099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013085 | CELA3B
Description
Bos taurus chymotrypsin-like elastase family, member 3B (CELA3B), mRNA. [Source:RefSeq mRNA;Acc:NM_001166518]
Coordinates
chr2:131427590-131428314:-
Coord C1 exon
chr2:131428178-131428314
Coord A exon
chr2:131427733-131428177
Coord C2 exon
chr2:131427590-131427732
Length
445 bp
Sequences
Splice sites
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
3' ss Seq
ACTGCTCTCTGTCTGCACAGCTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CAACGACATCGCCCTCGTCAAGCTCTCGCGCAGCGCCCAGCTGGGAGACAAGGTCCAGCTTGCCAACCTCCCTCCCGCCGGCGACATCCTGCCCAATGAAGCCCCCTGCTACATCAGCGGCTGGGGCCGTCTCTACA
Seq A exon
GTGCGTGCTGAGTCCTCCAACTGGCCATAGGGACGGTGGGCAGGAAGACAGAGCCTGGGGCGAGGGCTGAGGGCAACACCCAGAGCATCCTTGCACTTTTCTTCCACTCCTCCTCCAGCGGCCGCCTTCTCCCCTCATCCTCCCAAACACGAACGTGTGCAGCGGGACGGTTTTTAGTGTCTCCTTTGTGCCCGTTGCCGGGATGTTCTGATGGACAAAGCAGGCAGGACCACACGACCTGGTGGGAGGAGACTTCCCCTCACACTGGAGGAGCAGGCTTTCCTCGTAGCCCCACACCATTCTGGGGCTCCCAGCTCTGACTCAGACCCCGGCCTGGGCTCGGCCCCCCACGGCCCCGGCTCACCGCTCTCTGTCTGCACAGCTGGCGGGCCGGCCTGGGCTCGGCCCCCCCATGGCCCCGGCTCACTGCTCTCTGTCTGCACAG
Seq C2 exon
CTGGCGGGCCGCTGCCGGACAAGCTACAGGAGGCGCTGCTGCCCGTGGTGGACTATGAGCACTGCTCCCAGTGGGACTGGTGGGGCATCAGCGTGAAGAAAACCATGGTGTGCGCCGGCGGGGACACCCGCTCCGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013085:ENSBTAT00000017401:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGACATCGCCCTCGTC
R:
CGGCGCACACCATGGTTTT
Band lengths:
254-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]