HsaINT0033091 @ hg19
Intron Retention
Gene
ENSG00000219073 | CELA3B
Description
chymotrypsin-like elastase family, member 3B [Source:HGNC Symbol;Acc:15945]
Coordinates
chr1:22310187-22310824:+
Coord C1 exon
chr1:22310187-22310323
Coord A exon
chr1:22310324-22310681
Coord C2 exon
chr1:22310682-22310824
Length
358 bp
Sequences
Splice sites
5' ss Seq
ATAGTACGT
5' ss Score
6.05
3' ss Seq
GGTGCTTTTTATCGCTGCAGCCA
3' ss Score
6.36
Exon sequences
Seq C1 exon
CAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCGGCTGGTGACATCCTTCCCAACGAGACACCCTGCTACATCACCGGCTGGGGCCGTCTCTATA
Seq A exon
GTACGTGCTGACTTCTCTAGCTGGCCACAGGGACAGTGGCAGAAAGACAGGGCCTGGGGGCTGCAGGTTGAAGGTAACACCAAGACCAGACCTTGTACTTTTCTCCCATTTCTCTCCAGCTGCAGCCTTCTCCCACCAACCTCCAAAACACGAATGTGGTCAATTGCACATGTTTTGGTACCTTCTGTGTGCCACGTGCTAGGGATGTAATGGTGCACAAAGCATGCAGGACCATTTAGCGGGTGGGAGGAGAGTCCTCATCAGAGCAGAAGAACTGTGCGCCTTGGATGCCCCCTTCCTCTGGGGCTCCTAGCCCTGTGCCCCCAGACCCCTGACTCGGTGCTTTTTATCGCTGCAG
Seq C2 exon
CCAACGGGCCACTCCCAGACAAGCTGCAGGAGGCCCTGCTGCCGGTGGTGGACTATGAACACTGCTCCAGGTGGAACTGGTGGGGTTCCTCCGTGAAGAAGACCATGGTGTGTGCTGGAGGGGACATCCGCTCCGGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219073-CELA3B:NM_007352:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(22.5=93.1)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATCGCCCTCATCAAGC
R:
CGGAGCGGATGTCCCCTC
Band lengths:
270-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)