GgaINT1004130 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFS4]
Coordinates
chr3:89757987-89765920:+
Coord C1 exon
chr3:89757987-89758074
Coord A exon
chr3:89758075-89765787
Coord C2 exon
chr3:89765788-89765920
Length
7713 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTTCTTTCTTCTTTTCAGGTC
3' ss Score
14.06
Exon sequences
Seq C1 exon
GTGTCATCGGGGCTTGAAAGAGGTGTTTTTACTTATCAAGGTGACATACATGGAAAAGACTTTGGAAAATTTATGCTACAAAGACAAG
Seq A exon
GTAAATGCATTCTTAGAGTTTTATTGTGTATAATATTTTCAAGTCCTGCAAGAGTGGATTCAACAAATGATTCTGTCAGCTTTCTAGCTGAAGCATGTTTATTTCATGCCATTGCTATTATAAATTATATAATAAAGTATGCATATTTGGAATTTACAGTTCAAATACTAAGTTAATTCTGCTTAATATGTTTTCATGTAATCTTCCATAGCAGAGCTAAGTAATATGATGATTACATCCACCCATGCTGGATGTGGCTCTGGGCAGCCTGGTTTAGAATCGTATAATCATAGAATCATAGAATCGCTAAGGTTGGAAAAGACCCACAGGATCATCCAGTCCAACCATTTGCCCATCACCAATGGTTCTCGCTAAACCATGTCCCTCAACACAACATCCAAACGCTCTTTGAACACCACCAGGCTCGGTGACTCCACCACCTCTCTGGGCAGCCCATTCCAGTGCCTGACCATCCTTTCAGAGAAGTAGTATTTCCTAACGTCCAGCCTGAACCTTCCCTGGCACAGCTTGAAGCCATTGTCTCTAGTCCTATTGCTAGTCACCCGAGAGAAGAGGCTGACCCCCAGCTCACTACAACCTCCCTTCAGGTAGTTATAGAGAGCAATAAGGTCTCCCCTGAGCCTCCTCTTCTCTAGACTGAACAATCCCAGCTCCTTCAGCCGCTCTTCATAAGGCCTGTGCTCCAGACCCCTCACCAGCTTTGTTGCTCTCCTCTGGACATGCTCCAGGGACTTGATGTCTTTCTTACAGTGAGGGGCTCAAAACTGGACACAGTACTCGAGGTGCGGCCTCACCAGTGGTGAGTACAGGGGGATAATTACTTCCCTGTTCCTGCTGGCCACACTATTTCTGATACAAGTCAGGATGCCATTGGCCTTCTTGGCCCCCTGGGCACACTGCTGGCTCATGTTCAGTCTAGCATCAATCAACACCCCCAGGTCCATTTCCTCTACACAGTCTTCCAGCCACTCCACCCCAAGCCTGTAGTGTTGCCTGGGGTTATTGTGGCCAAAGTGCAGGACCCGACATTTGGTCTTGATGAATCCCATCCCATTGGCTTCAGCCCAGCTATCCAGCCTATCCAGATCCCTCTGTAGGGCCTTGCTACCCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCATCCAGTAGAGAATGGAGATTCTCCCTGGTCCTCCTCTTGCTGTTGATATACTTGTAAAAGAGTTTCTTGTTCCCTTTTACCCCAGCAGCCAGGTTGAGTTCAAGCTGGGCTTTTGCCTTTCTGATTTTCTCCCTGCGCATCTTAACAACTTCTTTGTATTCTTTCCGGGTTGCCCATCCCTTCTTCCACAGGAGATAGATTCTCTTTTTCTCCCAGAGCCTCAAGCATAGTCCCCTATTCATCCACACCAGCCTTCTTCCACACCAGCTCATTTTGCGGCTCAGGGGGACAGCCTGCTCCTGCACCTTTAAGACTTCCTTCTTGAAGAGCAACCAGCCATCTTGTACCCCTTTACTCTCTAAGACTGAGCCCCACGGGACTCTTCCTACTAGTCTCCTGAACAATTCAAAGTCTGCCCTCTGGAAGTCCAAGGTAGCCATTTTGCTGTTCCCCCTTCTGACTCCAGGAAGAATCAAGAACTCTACCATGTCATGGACACTCTGCCCAAGACAGCCTCCAACCTCTACATCTCCCACCAGGCCTTCTCTGTTCGTGAACAGCAGGTCTAACGGGGCAGCTCCTCTCATAGGTTCTCTTACCAGCTGCATCAAGAAGTTGTCCTCCATACATTCCAGAAACCTCCTAGACTGTTTCTTCTGCACTAAATTGTATTCCCAGCATATGTCGGGGAAGTTGAAGTCCCCCATGAGGACAAGGGCTAGCAATTGCGCAGCTTCCGCCAGCTGCTCATAGAACACCTCATCTGTCTCTTCATCCTGGTTCGGTGGTCTATAACAGATGCCCACCAGGATGTCTGCCTTGTTTGCTCTTCCCCTGATCTTAACCCATAAGGATTCAACCTTATTATCCCCAGTCATAAGTTCAATAACCTCAAAGCACTCTTTAACATAGAGAGCCACGCCACCGCCCATCCTTCCTTTACTATCCTTCCTGAAGAGTTTGTAGCCATCCATTGCAGCACTCCAGTCATGGGAGTGTTCCCACCATGTTTCCGTAATGGCAACTAGGTCATAGCTTGCCTGCCGCTCAATGGCTTCTAACCGTTTTTGTTTGTTGCCCATGCTGCATGCATTGGTAAGACACACTTTAGCTGGGCCTCTCGCCTCACCCCTAATCCCATTATCGCTCTGCCAGGCTCGTCTGTAGCAGGCCTGGTTTTATCCCCTTCCCCCCTCATGTCCAACCACCATGTCTAGTGGTTGGGTGACCCTGCACATAGCAGGGGGGTTGAAACTCGATGATCACTGTGGTCCTTTTCAACCCAGACCATTCTATGATTCTGTGATTACAAGATGTTTCTAAAGAGAGCCCAGTTGCAACTGTTCCCTTGTCAGTGAAGGGTTTTTTGAACGTAACAGAAGTGTCACACAATGCAAAGCTTTTTTCTGTTCAAATACATAAAATGCAAGCAGAATCATAAAGGAAATTGAAAAGACAGAATCACTGATTTTATTAGTTTCATTAGGAGGTGGCTTATTTCAAAATATGTATTTATTTAGATAGATTTCTACTTCACTGTCAAAAACATGAAATTAATGACTGGGATAAATATTGCATCCATGGATACAAGTAATCCAGGAGCTAGTGAAAAACTAGTTACAGTTATTACTTTTTTTTTTTTTTTTTCATGAAAACTAGTATAACATTTACTCATAAATATTTACTCATAAAATATTTTTGGGAAATACCAGCCATGGACATCTCAATTTCCTGATGCTTCAACAGGATATACGTAAGACAGTATTTATGCAGCAAAGTATTAGGTGAGCAGGAATTGGCAGCCTAGCCAACACATCTACACCATCATGAATCTGCATTTTACAAATTGTTGCAGTTTCATTAACATCATTGGTGCAGTACCCACTGGCCTGCAAAGTTCTACCAATGCTCCCTGATATTTCTTCACTCTATTAACTGGTGTAAAATCAGTTTCCCTAATGATGTGCTCATCTTGACCACTTTCCAAGTGCCACGTATGTTTAATCGTAAGGAGAGAATATCTTACTCTTCAAATTCTCAGCCTAAGAAATGCCAGTTATTGAAGCTGAATACTATTTCAGTCTTCAGAGTAAACTCTTACAAGGCACAGATTGTCTATCTGCCTGTACTTTTGTATAATTCATATCGCTATATCTAAACTGCTTTTTCTTTCTGATTTTAACAATCACACTATGAAAGTAGAGCACAAAGATTAATCCAAGCATATATCTTGTTGAAAAGCCTTTGGTATCTCTAAACAGTGGGGCTACGGTTTGTTGGATTTTCTTCTTGTTTTTACTTTTTCTTGAGTCAGGCCAGAAAAAAGATCCCCACTTCTCCAGTTAGAATCAGAATATTTAGAGTTGGAAGGGACCTTTAAAGATCATCTAATCTAACTCCCTGCAATGAACAGGGACATCCTCAGGTAGATCAGGTAGACCTAGGCCTGGTCCAGCCTTGACTTGAAAGTCACTAGGGACAGAGCATCCACCATATCACTAAGCAACCTGTTCCAGTGCGTCATCACCCTTGCTGTAAAATACTTTTTCCTTATATCTAACCTAAATCTCCACTTTTTAAGCTTGAAATCATTTCTTCTTGTTCTAACATCATGGACCCTGCTAAAGTCTCTGTCCCCTTCTTTCCTGTAGCTCTCCTTTAGATACTGATAGGTCACTATTAAGGCACCTCGTAGCCTTCTTCTCTTCTCCAGGCTGAACAGCCCCAGCTCTCTCTGCCAGTCCTTGTAGGAGAGGTGTTCCATCACTTGGATCATTTTTCATGGCTCTCCTCCATGTTCCAACATGTTCCAACAGGTCTATATCTCTGTTCTACTGAGGACTTCACATTTGGAGTTTGTAAGCAAATCCTTCAGCCATCGTCCCAAGTCCCTGAAGTCCCTTTTGATAGCCCTGGATCTACATGTTAGCTGCTTCATCTCTCCCTGTATGGAAAAGGAGTAAGAGGTTGTGGTCTGTTGGCTGTACCAGGCAAGGTAGTTTCCTAGTGTCATCCCAGCCCCAGGAAGACAACAGACTTCTCTAAGATGAAGGTCTGCTCAGCAAATTGGTTGTACAGTTCCCTGCAGGGAAGAATCAAGTACAGACCCATCTCTTCTTCAATTTGGATCAGTTTGGATCCATTTGATTTAGCAGTGAAATCAGTAACAAGTGGGGAAAAAGGAAGAAGCAGCAGAATGACAATTCAGCAGTTACAGTATTTTCTGATTGTTGTATTCTATGATAGCAGAAAAATGTCAGCCTTGAGAGCTGTAACATGAGAGCTCAGTCTGTGTATTCTAAAGGCTAGTAAGGAGCTGAAGCGTTAATTTTTACACATGCACTCTTAGGCTGAGGACTTCTTTACTTCAGCTTTGACATCTCAGAAGTGAGGCTTTTAAAAATGCAGGTACTATCTTTTAAATATTGATATACTTGGATTTCTTTGTGTGATCATTTACTAGACACTGAATGTCTATAGGTTGCTTATTCTCCATTGAAGAACTTATAGTTAGGAGGACACAGTAAATTTCAGACCAACACTGGTAATAACATCTGTTCATATACTGTCAAATTCAATAACATTTTTTTTTAAGTGTTATGTTCATAAATATTCTGCTGAGGTAATGATCTCACATGTCCTCAAGCTGAAGACTTAACATATTTCAAATTACTTCCTGCCTTTACACTAAACCAGAACTGTGCATAAACTCTGTATGCACTGGTGCATATAAAATGTAATATAAAATTTGTCACCTGCGAGCATACTTCAAAGAGCAGCATTTCATTAGAAGTACTTGGTTAAGTGTGAAAGACCAAGCTCTTTGAAGAATTTGCTATCACACAATTCTAGAGAAGGACCAGGCTGGGTGGTATGCTCGTTCTTGGAATATCATGAAAACTGAAAAAATTGTAGTTTCTAAGTACTGTTTGTTCTCTTTCCGAATCAGTTCTGTTTGTTTCTAGTCTTATATAATAGCTTAATGAGAAAACAGATCTCTGTTATCTGTCTGCCAAAAGAATTAGAACTTTAAATGATTTAACCTGTTTTGCCACTACTGTGAACTTTTTTTGTTTGTTTGTTATCTTTTAATATCTTGTTCTGTAAGGTCTGCAAGTCCACTGTTAGTTTCTGTTTCTTTAGTTGCTGAATGCCTATGCCTTACCTCTAGACTTCTAGATTTATATTCTAAAATCTTGGCTATTTCCATTTCAATCTGAAGTATTGTAGAATCATAATATCATCTAGGTAGGAAAAGACTTTCGACATCAAGTCCAATCATCAACCTGAACTATAGATTCCCATCACTAAACCATGTGTCTTAGTGACGCATCTCTTAAATATCTCCAGAGATGGGGACTTCACCACTGCCCTGGGCAGCCTGTTCTAATGCTTGGTCATCCACCCCATTAATATTTTCTTTCTGATATCTAATCTAAACCTTTCTTGGCACAACTTGTGATTGTTTTTTTTTTTGTTTGTTTGTTTTTTTCTTGTGTCCTATCACGTGTTACCTCAGAAAAGTGACCAGTACCCTTCTTGCTGAAACCTCCTTTCAGATACTTGTAGACAACAATGAGGTCTCCACTCAGCCTCTTCTCCAGACTAAATAGCCTCAGTTCCCTCAGCTACTCCTTCATATGTTTTATTTTCTGTCCCTTCACCAGCTTTGTTGCTCTTCTCTGTACATTCTTGAGCAACTCATTATCTTTCTTGTAGTGAGGAACCTAAAACTGAGCACAGTATTTGAGGTGCAGCCTCACCAGTGGTGAATATTTAGAGGGACAATCCCTTGCTTGGTCCACCTGGCCATGATTTTTCTGATGCCATCAACTTTCTTGGTCACCTAGGCATATTGCCAGCTTATGTTCAGCTGGCTATCAACCAGCACCCCCAGGTCCTTTTCTGCCATACAGCTTTCCAGACACTCTTCTCCAAGCCTATACAGCTGCACAGACTTGTTATGACCCAAGTGCAGGAGTTCCTGTCCACAGTAAGAGAGTTCACAATATAGGTAAATGGCTTTGCAATCTCTGCATGTGAGTTTTATACCAATGAAAAAGCTCCTGCTGGATGCTCTGAACCTCATGTCTCACCTCTTGAAGGAAACTGATACAGCCAGGACACATAAACTGGTGCTCAAGCACTGCTGAACCTAGGAGAACCAATGTGATTTATTGCAGTTACCTCAGTTCTCCTATCCTTTTCCATATTTTATGTAGTCACTCATAGCAGGATGCTTCTAAGCTAATATTAAGGATACAGCCATAGCATAATTTTTTGCAGTGTCAATCATTTGTTGTAGAAGGTGTAGGGCTTAATTTTATTCAGATTCTGATAGATGTAGTTTATGACTATGAAATTAAGTTGAAACAAGTATCATCTGCTGAATACTCTTTTCAAATCATTTTCATATTATCAATTATACATCGTTCAGTGGTATTAACAAGATATGACATGATACTGCATGTCATATACTGAATATTTTTAAATAGAATGATTTTATCAAGTCAGGATTTTCTTTTTGAATAAAAAGAGAATTCTGGGATAGAAAAAAATAAGAACTTTATTTCTGTCCTTTTTTTTTTTTTTTTTTTCTTTCTTCTTTTCAG
Seq C2 exon
GTCCCTTAAGTGCAGACACAGACCTTTCAAATCACTATTATGGTACAAACAGCAGTTCTGTTGCAGCTGCCATCCTGGTACCTTTCTTTGCTCTAATATTATCAGGGTTTGCATTTTACCTCTACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027412:ENSGALT00000044629:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]