GgaINT1004377 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKE5]
Coordinates
chr16:393068-393711:-
Coord C1 exon
chr16:393436-393711
Coord A exon
chr16:393341-393435
Coord C2 exon
chr16:393068-393340
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACAACGTCACCAATCGGCAGAGC
3' ss Score
1.81
Exon sequences
Seq C1 exon
GGTCTCACACGATGCAGATGATGATCGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGATCAGTATGCATTTGATGGGAGAGACTTCCTCGCCTTTGATATGGACACGATGACGTTCACTGCGGCGGATCCGGTGGCAGAAATCACCAAGAGGAGATGGGAGGAGGAAGGGACGTATGCTGAGAGATGGAAGCATGAGCTGGGGACTGTCTGCGTTCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGCGGCAGTGAAAAGGAGAG
Seq A exon
GTGAGGATGGGAGGGGGACTTGGGGCTGGGCTGGGTGTGGGGCAGGGGCTCAGTGTGTGGAGCTCAGCCCGGCCCACAACGTCACCAATCGGCAG
Seq C2 exon
AGCGGCCCAAGGTGCGAGTGTGGGGGAAGGAGGCCGACGGGATCCTGACCTTGTCCTGCCACGCTCACGGCTTCTACCCGCGGCCCATTGCCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACTCGCTGGGGGGGCATTGTGCCCAATAGGGATGGCACCTACCACGCCTCGGCTGCCATTGATGTGCTGCCGGAGGACAGGGACAACTACCGGTGCCGCGTGGAGCACGCCAGCCTGCCCCAGCCTGGTCTCTTCTCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027955:ENSGALT00000041159:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(55.7=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAAGGGACGTATGCT
R:
TGGCAGGACAAGGTCAGGATC
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]