RnoINT0024284 @ rn6
Intron Retention
Gene
ENSRNOG00000001333 | Azgp1
Description
alpha-2-glycoprotein 1, zinc-binding [Source:RGD Symbol;Acc:2187]
Coordinates
chr12:19199959-19202647:+
Coord C1 exon
chr12:19199959-19200234
Coord A exon
chr12:19200235-19202012
Coord C2 exon
chr12:19202013-19202647
Length
1778 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CACAATTTCTCCCTCTGCAGATC
3' ss Score
10.95
Exon sequences
Seq C1 exon
GGTCTCACACCTTTCAGGGAATGTTTGGTTGTGAGATCACAAATAACAGAAGTAGTGGAGCAGTCTGGAGGTATGCCTACGATGGAGAAGATTTCATCGAATTCAACAAGGAAATCCCAGCCTGGATCCCCTTAGACCCAGCAGCCGCAAACACCAAGCTGAAGTGGGAGGCAGAAAAGGTCTATGTGCAGCGAGCCAAGGCATACCTAGAGGAGGAGTGTCCTACAATGCTGAAGAAGTACCTGACCTACAGTAGATCTCACCTGGACCGAACAG
Seq A exon
GTACACACTGCTTTTATGATCTACTCCACGTACTAAACTGAAAACCAAGGTCATCTCAGTGCAAGGGACAATAGCAGGTTGCCCCATAAACCCTTCTAGTCCCTTCATCCTCCAGGTTTCATGTACTAGGAGTCATTTCTTTTGAACGCATGACATGAGAGCCAAAAGGAACATTCATTAAAATTTTAGGTCAGAAAACCCAGAGGGATAGCTCAATTGTACAGCGCCTACCTAGAATCCCCCAGTGTGGGGCTTGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCAAGAATCCCCCAGTGAAGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCTCAGTGAGGGACTGGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCAGTGAGGGACTGGGGACGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATACCCCAATGAGAGCTCAGCAGTGGAGCACCGTATGGCATGTACAGGAGTCTGGATTCAATCCTCAGCACTTAAAGTCAGGAACGTAGCTCAATGGCAGCATTCCCTGAATAACCTCCACTTTGCAGCACATGCAATAATCCAAGCACTCGGAAAGCTGAGGCTGGAGGATTGTGATGAGTTCAAGGCCAGCCTACATGACAAGTACCAGGCCAGCTAGACCCTGTTTCAGAAATCAGGTGGGAGGCACAAAAAAATATAATAATAAAGAATAAACTGGAGCTCAGCTTCTGGGTCCTCAAATTCCATAGTTCAGATACCAAATACAATACAGTGAGGCTTCTTGCAGACAGAACTAAGGAACTGGGCTGTTATTCAGGTAGTAGGGAGCAGTGGGGTTAGCTATAAAGCACACTCAAGACACTCAAAATCTGGGCATGGTAGTACATGCCAGTAATCCCAGCACTCAGAGCAAGGATATCTGTTCAAGGCCATCCTGGGCTATATAGTCTCTGTTTCATTATCTGTGTGAATGTATGATATTTGTATATTTGTATGTACGCATACATTTTGTGTGTATCCTATTTCTATATTTTGTTATCTGTGTGTATGTATAATGTATGTATCCTGTCTCTATGTTTTGTTATCTATGTGTATGTATGATGTATGTATATATCCTGTCTATGTTTTGTTATCTGTATGTATGTATGATGTATGTATGTATCCTGTCTCTATGTTTTGTTATCTATGTGTATGTATGATATGTATGTAATATATATTTATGCCTGTATGTATGCATGTATGTATGTATATGCATATATATGTAAGATGGTGAATGTGTGGAGAGCAGAAGACAACCTCAGCTGTTGGTACTGACCTTCCACCTTGTTTGAGACACCAGGTTAGCCCACCCACCAGCTTCCAGGTATTTCCCTGTCTCTGTCACCCATCACCATATATGAGCTCTGAGAATAGAGACATATACATCTGTGTTCTAGAGATTCACATTCAGATCATCATATTTATGCACAAGCCCTTTACCCACTGAGCTAGCTCCCCAATCCTTTGTCTCAATCAGTTGCCATCAGAAGTCAATACACCATAAGAAAAGGCAGGGAGTAAGAGACATACCATATAACCATATGGTTCTGGACATACCATATAACCCAACAGGGAAAGCTTAGGCAAAGCCTCAGCCTTTCTTGAACTTCACAAAGGTCTCTGGGAGAAGTCAGACTGGATGGTCATCCAGGGGGTTAGGAACAAAAGAAACATGGCAGGGAAAAGCCCACCTTAAGCTCTCTATGTGCACAATTTCTCCCTCTGCAG
Seq C2 exon
ATCCTCCCACTGTGAAAATCACCAGCCGTGTGGCCCCAGGAAGAAACAGAATATTCAGATGTCTGGCCTATGACTTCTACCCACAAAGAATTAGTCTGCACTGGAACCAGGCCAGCAAGAAGCTGGCATCTGAACCAGAAAGAGGTGTTTTTCCCAATGGAAATGGCACTTACCTCTCCTGGATGGAGGTGGAAGTCCCCCCACAGAACAGAGACCCCTTTGTCTGCCACATAGAACACAAGGGGCTATCCCAATCTCTCTCAGTGCAGTGGGATGAGAAAAGTAAAGTCTGAAAACAGTGCTGTATCTCAGCCTCAGAAAGGTTACCCTCTCTGCCGGATATGAGAGAGTTGAACTTCAGAAGTCACTGTCACCAGCAAGCCCGCAAGTCTCCAAGGAATGGGTGTGGGCCCAGAAGATTTGAATACCAAGCACCGAGTTCACTCTCAAAGTCAAATCAATCACCTTGCCTTGTAAAACTCCTCCTCAATTAATCTGTAAGCCCTTGCAATTACCTTCACGCCCAGCACAGCACAGAAAGGCATTTTAAACTCTGAGATGCTACAGAAGTGTGAGTTGATTTTATCATGTATACTGCCCCGACATACTTGATTCATGGGAATGTCTCCATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001333:ENSRNOT00000001801:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=83.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATCCCCTTAGACCCAG
R:
GACTTCCACCTCCATCCAGGA
Band lengths:
353-2131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]