HsaINT1004962 @ hg38
Intron Retention
Gene
ENSG00000160862 | AZGP1
Description
alpha-2-glycoprotein 1, zinc-binding [Source:HGNC Symbol;Acc:HGNC:910]
Coordinates
chr7:99966730-99968430:-
Coord C1 exon
chr7:99968155-99968430
Coord A exon
chr7:99967287-99968154
Coord C2 exon
chr7:99966730-99967286
Length
868 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
CACACTCTATCCCTCCACAGATC
3' ss Score
11.38
Exon sequences
Seq C1 exon
GGTCTCACGTATTGCAGGGAAGGTTTGGTTGTGAGATCGAGAATAACAGAAGCAGCGGAGCATTCTGGAAATATTACTATGATGGAAAGGACTACATTGAATTCAACAAAGAAATCCCAGCCTGGGTCCCCTTCGACCCAGCAGCCCAGATAACCAAGCAGAAGTGGGAGGCAGAACCAGTCTACGTGCAGCGGGCCAAGGCTTACCTGGAGGAGGAGTGCCCTGCGACTCTGCGGAAATACCTGAAATACAGCAAAAATATCCTGGACCGGCAAG
Seq A exon
GTACTCACTGCTTCCTGCTCCCCAGTACTGAGCCCAGAATAAAAGACGATCTCAGGCTAGGAGCTCAGGCAACATCTTAGTCCGGTCTCATCTGTTCCTGGATGTCCCTCAGACCCCCAGCTTTCATCTTTTAGGATTTATTCCTTCCCTGGGATAATATAATTTGTGGTCCAAAAAGAACATCATCAAAATTTCAGGCAGAATGGGCCAGGAAGGCCATTCTTTCTTGATGAGTGTCCCCAAATCATCTCCAATTAACAGACAAGGAGCTTGAGGTTAGGGAGGTGAGGGTAACACTGTCTGTAAGAGGCAGAGCTGGGACTCAAATTCCAGATTTCAGATTCCAAATCCCATCGTTTTTTATCTCTACAATGATGCCTCCCATCTGGGTGGTGGAGAGAAGGGAGGCGTGTAAAATGTCAGCCCCAGAAGGACAAGAGCAAGCCAGTGTGAGCGGAATTGATGGCTGCAAGCTGAGACTTGGATTGGAGACGTAGTGAGACTCAGGATTGTGCAGTGCTGCAGGGAAGTGGTTGCTGGATAGAGGCATGGGCTGAACCAAGCAGCTGGACTGAGACTGGGGGACAGAACTCCAAAGCCCACTGAGATGTGGGAAAACATGGAGAAGCACACGGAGCATTCACAACTTATTGCCGTCAGAGTCAATACATGGGTGAGGTGGGGATTGGGCAAGAGGGAAAGCGTCAGCCTTCCCTGATATTCTGGAAAGTCTCCCGGGGCTGGGGGTGGGCAGGTACAGAGCTTCGAGCTCTGCTGATCGCTGACATCCAGGGGTGGGGGTAGGAAGAGACCTGGGCCGGGAGAAGTCCACCTCAAGCCTGCAGTGTCACACTCTATCCCTCCACAG
Seq C2 exon
ATCCTCCCTCTGTGGTGGTCACCAGCCACCAGGCCCCAGGAGAAAAGAAGAAACTGAAGTGCCTGGCCTACGACTTCTACCCAGGGAAAATTGATGTGCACTGGACTCGGGCCGGCGAGGTGCAGGAGCCTGAGTTACGGGGAGATGTTCTTCACAATGGAAATGGCACTTACCAGTCCTGGGTGGTGGTGGCAGTGCCCCCGCAGGACACAGCCCCCTACTCCTGCCACGTGCAGCACAGCAGCCTGGCCCAGCCCCTCGTGGTGCCCTGGGAGGCCAGCTAGGAAGCAAGGGTTGGAGGCAATGTGGGATCTCAGACCCAGTAGCTGCCCTTCCTGCCTGATGTGGGAGCTGAACCACAGAAATCACAGTCAATGGATCCACAAGGCCTGAGGAGCAGTGTGGGGGGACAGACAGGAGGTGGATTTGGAGACCGAAGACTGGGATGCCTGTCTTGAGTAGACTTGGACCCAAAAAATCATCTCACCTTGAGCCCACCCCCACCCCATTGTCTAATCTGTAGAAGCTAATAAATAATCATCCCTCCTTGCCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160862:ENST00000292401:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=86.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAAGGTTTGGTTGTGA
R:
TGGGTAGAAGTCGTAGGCCAG
Band lengths:
346-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains