GgaINT1004846 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GMH5]
Coordinates
chr3:44665181-44666092:+
Coord C1 exon
chr3:44665181-44665329
Coord A exon
chr3:44665330-44665998
Coord C2 exon
chr3:44665999-44666092
Length
669 bp
Sequences
Splice sites
5' ss Seq
AATGTAAAC
5' ss Score
-0.1
3' ss Seq
TGTTTTTGTAATTATTACAGTAT
3' ss Score
5.73
Exon sequences
Seq C1 exon
ACTGCATTAACAGCAATGGTAAAGACTATCGCGGCACAGTAGCAAAAACTGGAAGTGGCAGAACTTGTCAAGAGTGGAGTTCTCAGAGCCCTCATAGCCACAAATACTTCACTCCTCTCACTCATCCAAGGGCAGGCCTGGATAAAAAT
Seq A exon
GTAAACATCTACTGCCGCTGGTGTCATTGAACATTGACTCCTTTCTCCATGACTCGTTAGCAAACATTTCACATTGAGTCTAAATGTACCTGGAAATCATGCTGATAACCCAGACCTATAGCAGTGGTGAAGAGGGAAGGATGCATTTTATAGTACCTAATATGTTGGTATTTGAAGCATAGATGTAAAACATCGAGCTGATAAAGGCTTCCTTTATTTTTGCAAGCGCCAGAGCAATGCCTTTTGTTGTCCGTCACCAGCCGAGCAGGCTCCTGGCAAACTCTCAGGACTAACCTAATTTGCTCTCACTAATTTCAGTGGAAGAAGTATTCAGCCAACAGTAAATGCCTTATTGCAAAACACTTAGTCATCCTACATCAAACTTTACTTAAAAAGCACTGGAGATAGGCTGACTCTTGGTGGATTCAGAAAATGGTAGCTATTTTTATATTATTATATTTGTCTAATTTTACAGTTGGTTTTGCAATACAGAGAATAATGAGTTTTGTTTAGAGGGAATAGAAACTGTTTAACATGCAGTGAGGAAGTGGTTGGGGAACATAGCTCCAAGTTTTAGGTTAACAACTTCAGAAAACATGCACTTGTAGACTTCTTCATAATGTTGCTTACATTTGGAGTCTTCATTCTTTGTTTTTGTAATTATTACAG
Seq C2 exon
TATTGCAGGAATCCTGACGGAGATGTAAATGGTCTTTGGTGCTTCACAACAGATCCAGAAAAAATATGGGAGTACTGTGAAATCCCGCGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028886:ENSGALT00000044267:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(60.0=96.0)
A:
NA
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCATTAACAGCAATGGTAAAGAC
R:
CGCGGGATTTCACAGTACTCC
Band lengths:
238-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]