HsaINT1021971 @ hg38
Intron Retention
Gene
ENSG00000198670 | LPA
Description
lipoprotein(a) [Source:HGNC Symbol;Acc:HGNC:6667]
Coordinates
chr6:160545440-160547937:-
Coord C1 exon
chr6:160547789-160547937
Coord A exon
chr6:160545534-160547788
Coord C2 exon
chr6:160545440-160545533
Length
2255 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
ACATGCCTGCTTGTTTTCAGTAC
3' ss Score
6.86
Exon sequences
Seq C1 exon
ACTGTATGTTTGGGAATGGGAAAGGATACCGGGGCAAGAAGGCAACCACTGTTACTGGGACGCCATGCCAGGAATGGGCTGCCCAGGAGCCCCATAGACACAGCACGTTCATTCCAGGGACAAATAAATGGGCAGGTCTGGAAAAAAAT
Seq A exon
GTAAGCCACTTTGATTTGGACTCTTTTTCCCTTTGCTGACAAATCTTTTCAAACAGAAGAGGGGCAGAGGAAAATACTGGAAAGACTTCAGGAGGCTAAGCGTAATTAGCCTTAGCATGGAAAGTGCAAGCAGCACAGGCCAGCAAAGCCCCACGCGTGTGGGGGTTCTCAGGCCTCTTCTCTTTTGACATTTCTTTACTGTTTCCATTGTTGGGTGCTGTTTCTCGTTTCTAGTGCTTGTCCTCTAAGCCAGGGGTCCCCACTCCAGTACTGGTACTGGTACTGGTACTGGAACTGGTAATTATCTGTGGCCTGTTAGGAACTGGGCTGCACAGCAGGAGGTGAGCTTCGGGGGAGCAAACAAAGCTTCATCTGTATTTTCTGCTGCTTCCCATCACTCTCATAGCTGCCTGAGCTCTGCCAGCTGTCAGATCAGAGGCAGCATTAGATTATCATAGCACAAACCCTATTGTGAACTGCACATGTGAGGAATCTAGATTGCATGCTCCTTATGAGAATCTAATGCCTGATGATCTGTCATGCTTCCATCACCCCCAGATGGGACCACCTACTTGCAGGAAAATTAGCTCAGGGCTCCCACTGATTTTACCTTATGGTGAGATGCACATTTATTTCATTATATATTACAATGTAATAATAATTGAAATAAAGTGCACGATAAATGGAAGGTACTTGAGTCATCCTTTAACCATCGCCCCCTCACCCCAGGTGCACAGAAAAATTGCCTTTTATGAAACTGGTCTCTGGTGCCAAAAAAGTTGGGGAACCACACTGCTCTGGGTTCTAGTAGTCAGAGATGCCCTCTATGAGGCTTAAGTCAGATTTTTCTAGAAAAGATTTGGATGGGCCATCAGGTCACCATGAGACTTCCCTTAGCCTCATGCATTCTCTGTGATGGTTTACTTTGGGGCCTATGAATAGGGAAGACTGAGATATAGGAAAAACCAAAGTGTCTGTGTTCCCCCACTCTCACACCCATGTAACATAACACTTCTCACACCAGATATGGGGGGATTTCTCCTCACACCCCAAGCGAGTCTCCAGCAGATACCAGCTGGGTGTCCTACAATGTAACTCGGTCCTGACACTCTATCTGGAGACAGTGTCAGATCCCACAAGTTAAGGCTCAGTCCTACAAGACTGCCCCACTGCAGATGCCAATCCCAAGTTGCAGGCTGTGACCTGTACTTCTGCCCAGCTGGATAAAGATCTGTTTTTCTATATGACCCTCCATGGGTTTGATTACTTTGCTAGAGTGGCTCACAGAACTCAGGGAAACACGTTACTTTTATTTACCCATTTATTATAAAAGATATTAAAAAGGATCCTGGTGAACAGCCAGGTGGAAGAGATGCACAGGGCAAGGCACGTGGGAAGGGGCTCAGAGCCTCTATGCCCTCTCCAGTGCACCAGTCCCCAGTACCCTAAGTGTTCAGCAACCCAGAAGCTCTCCAAGTGCAGTCTTGTTGGGTTTTTATGGAGGCTTCATTACAGAGGCACAGTTGATTACATCATTGGCCATCGGTGATCGGCTCACCTTCGGCCCCTCTTCCCTCCCTGGAGGTTGGAGGGTGGGGCTGAACAGTTCCAACCCTCAAGTCACATGGTTGGTTCCCTTGGCAACCAGCCCCTGGGGCTATCCAGGAACCCACCAAGAGTTGCTTCATTGCAGCTCCCTTCACCCAGGAAACTCCAAGGGATTTAGGAGCTCTGTGTTAAGAACTGGGGGGCAGAGACCCAATATACATTTCTTATTCTATCACAATATCACAGGAAGCTAAGGATGATACTGCCTTTGTGTGTCTTGGCTGTGGATGGTGCATAATGCATGGAAGTAAGCATTTCTGAATCAACAGCAAACAGGCTTTATCAGGTAGAAGACCCCTCAGCGCCCCAGGGACAAAGCTCATCAATGATGTCCCACTGTCCTCTGAGGCTCTAGCTCTAAGACCTCCAGTGGGTCAAGCTCCTGGAGAAGTGGCACATTCTCCAAAGACCCTTCAGGGTCACCACACCCTGGTTAAGGGTGTGGCCTCATAACTCCTTTTGACTATGACTGATGGCTTACAGCATAGAAAGAAATAACTTTGTCAAAAAATATAATAATGATAGAAAGGAAGAAGGAACGCTCCCTTTTGTCTTCTAAGAATAGATGTGAAATGTGTGTGCCTTAGAATATCTTCTCCCTCTCCTGCTCCACGTGAGCTGGAGCTTACATGCCTGCTTGTTTTCAG
Seq C2 exon
TACTGCCGTAACCCTGATGGTGACATCAATGGTCCCTGGTGCTACACAATGAATCCAAGAAAACTTTTTGACTACTGTGATATCCCTCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198670:ENST00000316300:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(60.0=96.0)
A:
NA
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains