GgaINT1005461 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6913012-6913693:+
Coord C1 exon
chr17:6913012-6913075
Coord A exon
chr17:6913076-6913566
Coord C2 exon
chr17:6913567-6913693
Length
491 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CAATTCTCTCTGGGATGTAGGCC
3' ss Score
4.19
Exon sequences
Seq C1 exon
GCCTGCTTTTGGAGGGAAGGAATGCCAGGGTGCCAGCATTCAAGCAGAGATGTGCAATACTCAG
Seq A exon
GTATGGCAGCTGATCACATCTTCTGAGCTTTTCTCTGAATGCTGCTTAACCCTTTGGAAGCTGCATGGTTTGGGACTGTACTTTTTACAGCCAGTTGCTGTGGGAAGGAGGACTAAAATCTGGCATACTGCCTCCCTCTGTCAATGTATTTATTCCACTGTGTCTGGAGACAACAGTATTATTTAATTGCGTTGTTCACATGTAATGAAGCATTTCTCTCTACGCCTTTATAGTAGGACAGACACTGGGAAAATAGAGACTCATTTAATGCTAATCTTCTTTGGAGGGACATTTTTACATTGGTCCTATTTTCCTTATTCTTTGCATTTCCTGCAGCCTCACTTTAAAGTGGTGCTCTTTATTTGTAGTCATTCTACTGTTTTACTTACCAGCCACTGCTTTCTGCCCCTAGCTAGTGGGTGAAATGCTGCTTGAGATTCTGTGCTTGGTAACCTCTTTTCATTATCTATACAATTCTCTCTGGGATGTAG
Seq C2 exon
GCCTGTCTGATGACCCAGCTTGACTTTATGGCTGAACAGTGTGCAGCAACAAATTTAAAGCCACTGTATCTCACTGTAGGAGTGCCATCCTTTTACACCTGGACTTCTGCTGTTGGCTTTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.2=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.0=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]