MmuINT0011171 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26839620-26841069:+
Coord C1 exon
chr2:26839620-26839683
Coord A exon
chr2:26839684-26840942
Coord C2 exon
chr2:26840943-26841069
Length
1259 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTTCTGCCTCCTCTGGCCAGGCT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GCCTGCATTTGGGGGACGTGCATGTGTGGGTGAAGACCTCCAGGCTAAGATGTGCAACACGCAG
Seq A exon
GTAGGCTGGTCTCCTAGCTGAGAGGGTGGATAAGAGTTAGCCACCAGAAGAGCTGACTCATGGGCTCATGACTCCCTTTCTCTGTGATGAGAACTGGCTGTGGGCATGGGGTCCTGAGGGTACACAGTGAAAAGTGTTTCATTTAGACACTGATGTGAAATGAATCTTGTTTAGTCAACCATTTCAAAGTGCATAGTGCATAGGCACTGAACACACAGGGAATGCTGTGTAAATACTGCCTCTATTTGGTTCCAAACACTTCCTTCACCCCAGAGAAACAACTCAACACCAGTAAGCAGCCTCTCATTCCCACCCAGCAGCTCCAACCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTATGCATCTACTCGTTCTGAGCACCTCATTTAAACACCATCTTGCAAGAGTCAGCTTCTTTGAGGTGGCATAACATCTTTCGAGTGTTGTCTATGTTGTATAATGAGTCAGAACATCGCTCCCATTTGGGGCTAAAGAACAGCCCACCATATGGATGGTGTTTCTGGTCTTCTTCGTTTCCATTGTTTGGGTCATTTGTTCTTTTTGGCTATAGCGAGTCCAGCTGCTGTAAATGAGTTGGCTTTAGTTGGCCTAACCTTCTGTGATGAAACACCACAGTAATTTGTCAACAACAGAAATTGATTTCTCACAATGCTGGAGTCTAGAAGTCCAAGAAAGGCCCTGGACAACTTGGTGTCCACTTCCCAATGGTCCCTATTGCCCCATCCTACAGAAGTCCAACATGTGGTGATACGGTCCAACCTACCTTTTTCTGCTAAATGCCCAAGGGGTCTCAGACCTTGAGAGGAGGGAGCTGTGGTTGTCATGTCTCCCCGTGTGGTCACCTCCAAGCCTTTCCTTCCCAGTGCAGTGAGGTAGTGCAGTGTCTCTGCAGTTCCTCAGTTCCTGCCCTGGATGTTCCTAGGAAGAAAATACACAGCTCAACCACATTTCCTCAGGTTCAGGACTTGGAACCAGACCCAAGTGCTACATTGTGTCCTGTTTTTCTCTTCCCGCTGTTGCTGCTGTGTCCTTTACATATTATCTGGAATTTCCCCATGCACAAAGAAAGGCAGATCTGGTCACCTACAGACTACTGAACAGAGATAAGCCACAGCCTGGGGCTGAGTTATTGTCTCTTGACTGCATGCAGGATGCATGCTGTCTCCCATTGGCCACAACCCCGCCTGTACCACCTGTCTTCTGCCTCCTCTGGCCAG
Seq C2 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCCGAGCAGTGTGCCCAGACAGACAGACAACCACTGCAACTTTCCCAAGGCACTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.2=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.0=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: