RnoINT0013299 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5538311-5540729:+
Coord C1 exon
chr3:5538311-5538374
Coord A exon
chr3:5538375-5540602
Coord C2 exon
chr3:5540603-5540729
Length
2228 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTTCTGCCTCCCCTGGCCAGGCT
3' ss Score
8.17
Exon sequences
Seq C1 exon
GCCTGCATTTGGGGGACGTGCATGTGTGGGCGAGGACCTCCAGGCTAAGATGTGCAACACGCAG
Seq A exon
GTAGGCTGCTCTTCTAGCTCAGAGGGTGGATGAGAGTTAGCCAGCAAAACAGCTGACCCACGGGCTCATGCCTCCCTTTTGAGGGACACGGTGGTTAGCAAAGACACCATGTGAATGCTTTCCTCTTAGAGTATCTCACCTTTGAGATGACATCTCTGTGATGAGAACTGGGGTCCCGGGAGTGCACAGTGAGAAGCGTTTCGTTTAGACACTGATGTGAAATGCCTCTGGTTTAGTCAACCATTTCAAAGTGCACAGTACAGGGGCACTGAATACACAAGGGGTGCTGTGCAAACATTGCCTTTCTCTGGTTCCAAACACTTCCTTCCCCTAGAGGAACACCCTACACCAATAAGCGGCCTCCCCTTCCCACTCAGCAGCTCCGATCTGCTTTCTGTCCCTTGCGTCTGCTTGTTCTGAGCCTCTCATTTAAACACCATCTTACCAGAGCCAGCTTTGCTAGAGCATGACATTCTCGAGTGTCGTCTGCGTTTCACCATGAGTCAGTCCATCGCTCCATTTGACGCTAAACAACAGTCCATGGCACGGATGGCGCTTCTGGGTTTTTTTTTTTTTTTTTCATCTTTTCCGTTGTTTTCGTCATTTGTTCATTTTGGCTACAGCAAGTCCAGTGCTGTAAATGAGTTGACTTTAGTTGGCTTGACCTTCTGTGACAAAACACCACAGGCAGAGTAACTTGTCAACAACAGAAATTCATTCTTCACAATTCTAGAATCTGGAAGTCCAAGAAAGGCGCTGGCCAACTTGGCGTCCACTTCCCGATGATCCCTGTTGCCCCATCCTACAGAAGTCCAGAATGCATGGTTCTCACATGGTGGGGGGACAAAAGGGACAGAAGTTCTGCTTCAGAGGCCTCCAGCCCTTTTATAAAAGTCCAGTCCTAATTATGTAGGTGGACTCCCTGAGACCTATCACCTCTCCAGGCCACAGCTCTTGGTACTAAGCTCATCGTGGATTTTGGAAAACCACGATAAGACCTAAAAGTAAAAGTTGAATAGAAACTCTATGCTTAACTTTTTTTTACTCCTTTTAAAAAGCCACATTTTGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCCCCGAAAAAAAGAATAAAGAAGAAAAAAGAAAAAAAAAGCCACATTTAACTTTTTCAAATGTGTTCATGTATGTATGTCTCTCTGTGTGTATACTCACTTGTGTGTGTGTGGGGGGGGGTTCCTTTGAAGGCCATAAAAGGGTGTGGGATCACCTGGAGTTACAGGTAAGTCCCTTGACATGGGTGCTGGCTCACGACTGAACCTGAGTTCTCCACAAGAGCAGTAAGGGCTTCTAGCTGCTGAGCCATCATCTCTAAGCCCCTCCCTGTTTTTTCGAGATGGGTTCCCACCCACTCGAGCTGGGACTCGCTGTAGATCAGGCTGGCCTTGAACACACAGAGAGCCACTTGCCAGCGCATCCCAAGTCCTGGCATTAAAGGGCTGTACCACCGCATCTCCCTTTACACAGCCTATTTCTCTTTACGCTGGGGCCATTTTACCATTTCGTATTCTTGTCATCAGTGTATGGGGATTCCAGTGTCTCTGTGTTCTCTCCTACACGTGTGAGTTTGTCCTAGTTGGCATGAGGTAGAATGATTTTTTCTGTTCTATTCCAACTTATTCTGTGTTTCAGATGACTGCCGGCCACCAGAGAATTCAACATGTGGGATTCCCACTTTGCCTTACTCTTTGCCCTTTTCTGCTAAATGCCCAAGGCCTCTCAGACCTTGAGAGAAGGGAGCTGTGGTTGCCATCTCTCGCCCTGAGCTCAACCCCAAGCTTCTCCTTCCCAGTGCAGTCAGGCAGTGCAGTGCCTCTGCAGATCCTCATCTCCTGCCCTGGACGTACCTAGGAAACAAATACACAGTTCTCCCTCATTTCCTCAGGTTCAGGTCTTGGAACCAGAGACCCCAAGTGCCACCCTGTATCCTGTTTTTCTCGTCCTGCTGCTGTTGTGTCCTTAGCAGATTATCCCAATTTCCCCATGCACAGAGAAAGGCAGAACTGGTCACCTACAGACTACTGAGCAGAGATAAGCCACAGCCTGGGGCTGAGTTACTCGTCTCTTGACTGCATACAGGGTGCATGCTGTCTCCCATTGGCCAGGACCCCACCTGTATAACCTGTTTTCTGCCTCCCCTGGCCAG
Seq C2 exon
GCTTGTGAGAAGACTCAGCTGGAGTTCATGTCAGAGCAGTGTGCCCAGACAGACAGACATCCACTGCAACTTTCCCAAGGCAGTGCCTCCTTCTACCACTGGGATGCTGCTGTGCAGTATAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.2=100)
A:
NA
C2:
PF0009014=TSP_1=PD(2.0=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]