GgaINT1005855 @ galGal4
Intron Retention
Gene
ENSGALG00000023517 | AGPAT2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:325]
Coordinates
chr17:7740736-7741277:+
Coord C1 exon
chr17:7740736-7740869
Coord A exon
chr17:7740870-7741101
Coord C2 exon
chr17:7741102-7741277
Length
232 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ACCCTCTGCCGTCACGTTAGGGC
3' ss Score
5.77
Exon sequences
Seq C1 exon
GATCATCAAAACCGTGGTCAAGTCCTTCAAGTATTTCTTCGGCCTGAGGTTTGAGGTGAAAGGACTGGAGAACTTTGAGGTGGAGGGCCCTGCCATCATTGTGTCCAACCACCAGAGCATCCTCGACATGATGG
Seq A exon
GTGAGGAGCAGCCCAGCAGGGGGGAGCGCTTCTCTTGGTCGCCCTCAGGGAGGTCCCGCTGGCAGCCCCTGCCCCGGCACTGCTCTGTGCTCCCGAGGCTGCTGGTTTGGTGCTGGTCACAGGAAGGGCCTCCCTTCACGCTGAGCAATCCTCCCCCTCCCTGTGTCCCATCCAAGTGCAGGCGCTTGGGGAGGGGGTGGCTGCCGGGTCTCACCCTCTGCCGTCACGTTAG
Seq C2 exon
GGCTGATGGAGGTCCTGCCCGACGGCTGTGTCCAGGTGGGCAAGAAGGAGCTGATGTACGCCGGCACGGTGGGGCTCATCACATACCTCGGGGGTGTCATCTTCATCAACAGGAAGAGCACCACCAGTGCCAAGATGGTGATGGCGGAGGTGGCCAAGACTATGACAGCTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023517:ENSGALT00000039021:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(22.5=63.0)
A:
NA
C2:
PF0155316=Acyltransferase=FE(45.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGTCAAGTCCTTCAAGT
R:
GCTGTCATAGTCTTGGCCACC
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]