MmuINT0012730 @ mm9
Intron Retention
Gene
ENSMUSG00000026922 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) [Source:MGI Symbol;Acc:MGI:1914762]
Coordinates
chr2:26451811-26452857:-
Coord C1 exon
chr2:26452724-26452857
Coord A exon
chr2:26451987-26452723
Coord C2 exon
chr2:26451811-26451986
Length
737 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
TCGCTCTCTCTTCCATATAGGTC
3' ss Score
10.6
Exon sequences
Seq C1 exon
CATCATCAGCTGGTTCGTTCGGTCCTTCAAGTACGTGTATGGCCTTCGCTTTGAGGTCAGCGGACAGAAGAAACTGGAGGTGGATGGTCCCTGTGTCATCATCTCTAATCACCAGAGCATCCTGGACATGATGG
Seq A exon
GTAGGCTGCCATCAAGGCTTGGCCACAGAGAGGGCGATCTTTCTCAGCCTGGGCCCTGGTGGGCTGGGGTCTCTGGCTGGGACTGGTGCAGGACAAGACTTCCCTCAAGCTGGGCAATCAGAGGCCCAGGACTGCACCACTTTGGCTATTTCCCAAGAGACAAGACCAGGCCAGAGGCAGGGACCTTGACAGGTGGGCCACCAGCCCCTTCTCCCCCAGGGAGTGCCAAACTGGGCTCTGAAGATCTTCTTCTCTCTTGTTCCCCACCCAACCTCCCTCTCCCCAAACCTTGCCACTCTCTCCATTTTTTCTATGACTCTCCTCCTATCTCTTCTTCCATCCTTCCCTCTGTCTCTGTCTTTCTCTGTCTTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCCTGTGTCTCTCAATCTCCATCTCTGGTCTCTGCCTCTCCACCTCTCCCTCTTCCTCTCCTCTGTATCCATTCCTGGGTTTTTTTCTCTTCTCTCTCTCTGATCTTTGCTTCCTCTATCTCTCCCTTGCCTGCTTCTCCATCTGTGTCTGTCTCTCATTATCTCTGTCTCCCTCTCTATTTCTCCTATGCTCTAATCCTCTTTCATTGTCTCCTATGTCTCTGTCTCCTATGTCTCTCTCTCTCTTGTCTCCATCTCCCACCCTCTCTTCCTTCCTCAATCGCTCTCTCTTCCATATAG
Seq C2 exon
GTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGTGGGCCTCATCATGTACCTTGGGGGTGTCTACTTCATCAACCGCCAGCAAGCCAGAACTGCCATGTCTGTGATGGCCGACCTGGGCGACCTCATGGTCAAGGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026922-Agpat2:NM_026212:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(22.5=63.0)
A:
NA
C2:
PF0155316=Acyltransferase=FE(45.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCAGCTGGTTCGTTCGG
R:
CCATGAGGTCGCCCAGGTC
Band lengths:
298-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: