HsaINT1003191 @ hg38
Intron Retention
Gene
ENSG00000169692 | AGPAT2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:325]
Coordinates
chr9:136676961-136677556:-
Coord C1 exon
chr9:136677423-136677556
Coord A exon
chr9:136677137-136677422
Coord C2 exon
chr9:136676961-136677136
Length
286 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
TCTGTCTCTCTGTCTCCCAGGCC
3' ss Score
11.48
Exon sequences
Seq C1 exon
CATCATCGGCTGGTTCGTGCGAAGCTTCAAGTACTTTTACGGGCTCCGCTTCGAGGTGCGGGACCCGCGCAGGCTGCAGGAGGCCCGTCCCTGTGTCATCGTCTCCAACCACCAGAGCATCCTGGACATGATGG
Seq A exon
GTAGGCCGGGCCTCGGGGGTGGCTTCTGGGGTTTGAGTGGGGCCGGCTGAGCTGGGGCTGTGTGGGGCTGGGTCCCGGGGACGAGGACACAGGGCTGCCTGTGCCTGGGCGAGCTCGGCCTCAGTACCTCCCTCAGGGCCAGACACAGAGGCTCGGAGGCCACACGACCCGTCCAGGTAGCCAGGGAGAAGGCAGGGTGCCAGGCAGGCCTGTGGGTGCTCAGCAGCTGTCTTCCAGCGCACGCTGTCTCCCCCTCTCTCTCTGTCTCTGTCTCTCTGTCTCCCAG
Seq C2 exon
GCCTCATGGAGGTCCTTCCGGAGCGCTGCGTGCAGATCGCCAAGCGGGAGCTGCTCTTCCTGGGGCCCGTGGGCCTCATCATGTACCTCGGGGGCGTCTTCTTCATCAACCGGCAGCGCTCTAGCACTGCCATGACAGTGATGGCCGACCTGGGCGAGCGCATGGTCAGGGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169692:ENST00000371696:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(30.9=63.0)
A:
NA
C2:
PF0155316=Acyltransferase=FE(61.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCGGCTGGTTCGTGC
R:
TTCTCCCTGACCATGCGCTC
Band lengths:
308-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains