GgaINT1006104 @ galGal4
Intron Retention
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10237437-10241417:+
Coord C1 exon
chr20:10237437-10237963
Coord A exon
chr20:10237964-10241261
Coord C2 exon
chr20:10241262-10241417
Length
3298 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATCCTCGCTGCCGTCCGCAGCTG
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTTTTTAAACAGATTTTTCCTTTTTTTTTTTTTCTCTCTCTCTCGGGGTTTTTGTTTTTTTTTTTCCTTCCCTCTCAAGGGCTGCCGCGGGACTCAGCCTGGCGATAAAAGGCTGCGGGGCGGCCGGAGGCGGCTCAGAGAGCAGCGGGAGGCGATGCCGGCCCCGCAGCGCTGCGCCCGCTGAGTGCCGGGGGTCCGGGGGGGGTCCGGGGGGGCTCCGTGCGCCCCGCGCCATGCGCGCGCTCAGCCTCGTGGCGTTGGCAGCGCTGTGCACAGCCGCATCCCAGCGTAGGGCGCTGGACGTGGGCAGCCGCCGGCGTTGGCACCGCGTGCAGCACGGGCACTGCAGCTACACCTTCGTGCTGCCCGAGGCCGAGCCGTCGCCGTGCCCGCTCGCCGCCCCCGGTCCCGTTAACGCGCTGCAGCGGGATTCGCCGTCCGGCAACGGGCACGCTGCCCGCGGGGCTGCCCAGCGCCTGCAGCACCTGGAGAGGATCCTGGAGAACAGCACGCAGTGGCTGCTGAAG
Seq A exon
GTAGGCGGTGGGGAGGGCTGCCCCCTGCAAGCGCTCTGTGCGGGGGTTTGGTGCCCCAATCTGCCCGAATCTCATCTCAGAGCCCGAGCCGGCGCCGCTTTCGCCCAGCTCTGTTTGCCCAGAGGGAAGGGGTGGGCGCTGTGGGCGCTGTGGGCGCTGCTGCTCGCCGGGCCGTATCCCTCTGCGTCCCCACCGCGGTCCCTTCCTTGTCCCTGTGCCCTGCCGTGCCGGTGGTCCCGGGCACCTTACGGTGCTCAGCACTCTCCGTGCAGGGTCAGGATGCGGCGCTGCCGGGAAGCTGCTGGGAAGGCTTTTGCACGCAGCGGGGTGAGGGACCGAAGGGCAGGGTTCATCGTGTTCCTGCTTATGGGCTTCACAAATGTTCCCGGCATCAGGCGAGACTCTGCATGGGAAACACAGCTCGTGGCCTTCCAGCCCCACGGGGGCACTGGGAGCCTCAGACCCACGGCGGGGGCAAAGCAGGAAGGAGGGCACCCCGTGCCATGGACCCCCCTCCCCATGCCGGGGACCCTCTGCTGCGCTCCCCCATTCCCGGCCCCGCAGGGTGAGGCAGGAAGCGGCTTTTCCTTTCCGAGGTCTCACCCGACACCTCCTGACCTCACATCTGTGTGAGCATCGGAGAAGATCTCCCCCGGGGCCGCGTCCCCACGGCGGGGCCTCAATCCCCACAGCTCATCCCCGGCTGTCACCCAACCGAACCGAGCGGCACCGCGAGCACCGCGTGGGGACAGCAGCGGGCACATGAGGGACACACAGGGCTGCCCCATGTCCTCCCCTCAGCCGACTCAGGCCACAAATTCCTCAAAAGCTGGGAGGATGCTGAGCCCCACTGAGCAAAGCTGGGGCCGTGTGTGCCCATCTGGGCGGCTGCATGCAGTGGTGCTGCACCCCATAAGCAGGGGCACAACTGGTGCTCGTCCCACCCCACTGCACGGCCCCTCCGCTGCAGGCAGCTCGCAGTTGGGTCTTTGTTTTTGTGCGTCTGTGTCCAGTTTCTTTGCTTTCCTAATTTAACTGAAACTGCACAAGGAGGATTGTTTTGGTTGGGATCCAGGCCTGAACAAACAAACTGGGCTCGAAGGAGGCACCGGGCTTGAGGACGAGTTGTAAACAACCCCAAATCCCCATCTGCCCATGGAGCAGAGGATTCGGGCTGTGCCCAGGGCCAGGGATATGGCACAGCCCCTTTGGGGCCCCTGTCCTCCAGCTCAGAGACCTCTGGGGCCAGGTCACCCTCCCCGCACTGCCAAGCATGCTGTCACCAGAAGGGACAAGAGTGACACAATGAGGACATGAGGACACGTGGCTTTGCCCAGGGGAGGCTGCATGGTGATGCTGCAGAGGATATGGGCACCGAGCACCTCTCAGTGCCACCATTCTGGCCCTCCCTCTGGGGAGTGACAAGACGTGGGGCACAAAACCTGCCCACGGGAAGGATTGTGACCCCGGTGCCTGGTGCAATGGGACCTCCCAACTGTTTGCAATGGGTCCCCAGCGTGGGGACATCGGGGTGGCCATGCTGTGCTGCTGGCCGGGGGCCTCTCGCCGCGGGGTTTTGCTGCTGAGCAGAAATTCTTGTGGAGGCTGCAAATGTTGGCAGCTCTCACTGTTGGCCCAGGACACAACATGGGGCCGGAGCCGGGCTCGGCTGTGGTCAGAGCGCTGCTGGTGCGGCATCGCCCCGGTGTGACACTGCGAGGGGGATGGGACCAGCAGCAGGGAACCTGCGCCTTCCTGGCTTTGGTGGCCCCACCCCTGCCCTGTGGGGATGGCCCCATGGCTGCAGGCTCTGGGAAGACTTTGGGGGTGACCCTCTTGGGGAGGGTCCCCTCATTCCTTTCTGCAGCCGTGCAGCCCCCACAAGGGTCCACATTATCCAGGGACGCTGCAGCTCCATCCAGCCCCGGCTGCTTCCCAGATCAATGCCTTCAGCAGAGCCGTGGTCGGGGCCTGGAGGCTTTCATGCTTCCCCCAGGGAGGGCAGGGACCTCCAGAGGAGGCCCCAGCACCACTCACAGGGAGCAGCCGGGGCCATGCTCAGCCCTGCCTGTGCCAGCCCGACCTTTTCCATGGGTACGTGCTGCCCTTCGCTCAGAGATACGTTTATTTTGAAAAAAAAAGAAAAAAAAAGGCAAAATCAGAAGGGAGAAATGGCCTCCAGAGCCCTGAGAAGCAGCAAGATTAACGACGTGGTTAAAGGGAAACTCTCTAGCAATCACTCAGCTGGGGAAGTGCTTTCCAGACATGGCACTGGGACATGGGGTTTGGTTTGCAGCAGCTCAGAGGGCACAAGATCCACTTGGAGAGGGCAGAGAGGGATCCATGGGGCAGTGGGATCCACGGGGCAGTGTTCCCAGCGTGGGCAGCAGCACATCCCTTCCGCTCCCTGCAGTCCCTGCACAGTGGCCCCATGGCCACAGCCCTTGTTGAGGCTGTCACCCCAGAGAGGGGATGAATGGGAACCTCATGGCAGCTGCCAGAAATAGAAACCCACTGGGAAGCGCCTGTCCCCCGCGGGCTGGGAAAGCGGAAGACGCTTTGGAGCCGTGCACATAGCCGGCTGCTTCCCAGCCATGAGCACTTCCCTGCAGCAGGGCAGCAGCCAGCACAGGGAAAGCCGCCTTCACCGGGATGGGGCAGTGGGGGGGGGATGCTGGTGGCCGTGGGAACCCAGCCAGCAGCTGAGCCCTGCTGGTGCTGGTGCCGATGCCTCCCTGGCTGGTCAGTAGTCCCAGCTCAACAATAGACCCATGAACACACAGACCTGTGCCAGGTCCCAGCAAGAGGAAAGCCCCATGCGGGGACTGTGGGCATCCCCATGGCTATAAATCCCACCCACTCCATTCAGCTCTGCTTTGCCACTATGCCGCACCCCAACTTTGCAACCGCTCCAGTGCCACCCGCAGCAGTGTGCCATCCATACGCCCAAGGATGCTGTCCCGGGCTGTTCCCATTGTGTCACCTCGCTGCTTTTGAGCAGGGTGAGCTGCAGTGCTGGCAGGCAGCAGGAGCCGTTCTCCTGACCCAGACATGTGGGAGTGGAGCAGTGTGAGGACGCCGGATGAGGAATGTTGGCGGCGATGCCCGGGGCTCCCCCACAGCACTGCAGCCACAGGCAGCACGTTCCATCCTCCCAATGAGCTCCGAAGCACTCAGGATGGGTTGTGCTGCACCGCAACGCCCCCACATCAGGGTGCCCGGGGGGCAGCAGTGAGGCTGGGCAGGGGGTGAGCTCCTTGGCTGAGCCATCCCACCCCATCCTCGCTGCCGTCCGCAG
Seq C2 exon
CTGGAGAGCTCCATCCAGAGCAGCATGAAGCCGGAGATGGCGCGGCTGCGGCAGACGGCGGTGCAGAACCACACGGCCACCATGCTGGAGATCGGCAGCTCCCTGCTGAACCGCAGCGCTGAGCAGAGCCGCAAGCTCACCGACGTGGAGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890:ENSGALT00000045797:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]