GgaINT1006107 @ galGal4
Intron Retention
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10241959-10242465:+
Coord C1 exon
chr20:10241959-10242191
Coord A exon
chr20:10242192-10242349
Coord C2 exon
chr20:10242350-10242465
Length
158 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGCTCTCCGTTCTGCCCAGCCC
3' ss Score
6.43
Exon sequences
Seq C1 exon
CATCCTGGAGGTGCGGGTGCTGGATATGGAGGCGAAGCACCAGGCGGAGCTGGCGGGGATCCGCTCAGAGAAGGAGAGGCTGCAGCACCTGGTGAGCCGGCAGAGCGGCACCATCCAGGAGCTGGAGAAGTCTCTGCTGGCGGCCAATGCAAACGCCAGCCTGCTGCAGCGACAGCAGCTGCAGCTCCTGGAGTCGGTGCAGAGCCTGGTGCGCCTCGTGGCAGAGGGTAGAG
Seq A exon
GTGAGTGGGGAGAACCTAAAAACGCTGCATCCCAAGAGCGACTCAGCCCTGTGCCCCGAGACACAGCAAATCCCCAGGGCTGGGGAGATGGGAGGAGCAGGGATGCGGGACCTGCAGGGTCCCTGGAGCACCCACCAGCTGCTCTCCGTTCTGCCCAG
Seq C2 exon
CCCTGCTGCCTGCTGAGGAGCAGCGCTTCCAGGACTGCACCGAGGTGCTCCGGGCTGGCAGCCGTGCCAGCGGGGTGTACACCCTGCACATCACCAACCTGAGCGAGCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890:ENSGALT00000045797:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032458=Phage_lysis=PD(62.7=65.8)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGATATGGAGGCGAAG
R:
CAGTCCTGGAAGCGCTGC
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]