RnoINT0017308 @ rn6
Intron Retention
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147440369-147445641:+
Coord C1 exon
chr3:147440369-147440607
Coord A exon
chr3:147440608-147445525
Coord C2 exon
chr3:147445526-147445641
Length
4918 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTGCTCTGTCCTGTTGCAGTTT
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGCCCTGGAGACCAGGCTGCAGGCATTGGAGGCACAGCATCAGGCCCAGCTTAACAGCCTCCAAGACAAGAGGGAACAACTGCAAAGCCTCCTGGGCCATCAGACTGGGGCCCTGGCTAACCTGAAGCACAGTCTGCGAGCCCTCAGCAGCAATTCCAGCTCCCTGCAGCAGCAGCAGCAGCAGCTGATGGAGCTGGTACAGCGCCTGGTGCGGATTGTAGCCCAGGACCAGCACCCAG
Seq A exon
GTGAGCAGGAGGGAGTGTGCATGGGCTGGGGTGGAGAGCCAAAGACGGAAGGGAGACCCTGTGGAGCCTCCTCAGCCTCTAGGGGCCAGGGACCTATTGTGTGAGAGGCCAGCCCTCTCCTACCATTTGCAAAAGAGAAACTCAGTGACCAGTGATCATACTGGCCACAGCAGCCACTAAGAGTGTCCAACTCAGACTCTGCCCTTGTCTCCTGGGAGATCTTAGCTCTGCCTCTGTTCCGCTCCTGGCCTCAGTTTTCCCATCTGTTGAATGGATATGGTGATAACAACACAGGCAACCACAGCCTACATTGACAAGTCTGTGTCCCAGCTCTTTAAAAAAAAATAAAACAAAAACAAAAACAAAACAAAAAACAGGTCTTATATAGTTCTAGCTTGGAACTTGCTATGTAACGTGGCCTCAGACTCACAGAGTCCCACCTGCCTTTGTCTCTCAAGTGCTCAGATTAAAGGCATGTGCCACCATACCCAGTTATTCAGCTCGGCTTGCTACACGCTTCCGTGGGCCTCAGTTTCCCCAAAGAATGGAAGAGTTGGAGACAAATGCCAAGACTTCTCTACCCTGGTGCTCCTGTTCCAAGGCTTGCAGAGCCATATGGAACTAGGAAGAAATGTGGTGTCCCCAGCCTATCATAGAAAGGAGAACCATGCCTAGCTTGCTCCACAGCCTCCTTGGCATGCCTGGTTCTATCTGCAGCCATTTAATCACCAAGCATCTATTGAGCAGGCAGGCAGGGGCTTGGGTAACAGGGACTCAGCAGCACACGGATGTCGTGGTTTGTCTCTTGTAAAATTCCTTACTGTTTGTCTGGTCTCTGTGGGAAGGAGAAGGAAAGGGCCCACTGTCTGCCAGGTACACTTCCATAGCTTTCTGCCTTCAGCTTCCTCAGCTCAGAATGCTAAGGGGCTGAGCTACGAAGAGGGTACTTCAGTTTAAGGCCAGCAGGGGGCACAAAAGAGGCAGGATGGGGTGGGATTTCTTTTAGAGAGCGCAGAATAGTGTGGAGTGGATGCTAGCTTAGTGGGTGAGAAACCAAAGGGGCTCCTGCTGTAGGACAGTCTGAACCACCTTGGAGGAGACTGGACCTTCTGTAAGACACCCAGCTTCAATCAAGTGAAAGGGTCCCAGGCAGATAGTGAATTGAGGCAGAGGATCCCAGCGTGAGCTTACCCTAAGTCCAGCAGGCAAGGGAAGCCATGAGTGAGGGAGGTAGAGGCCTCCTAAACCTGAGGATAGGCAGTGAACAGAAGCCATTACGGGCTTGTACACAACCCTGGCAGCAAGACAATCTAAATGAGACCTGGGGGATGCAGGGGGGTGGGGGGAGTGGTCTTCCAGGCAAGGAACCTGGGCTGGGGCCTCTCCTCACAGGTCCACAGCTCTCCTGTCCCCTCCCACTGAGGCTGAATGACTGTTCCCTAAGCCCAATGGAAGGTCGTGTCAAGCACTTGATCACTCCTGAACTTGCCTGACTGACACCAGGAAAAGACTTTTCGGTGGTTGCTCTTGCCCCCTGTACATGGAGAACCCATGGAAGATTGATGAATGAGAGTCGGGCAGAGGGTGGGGCAAGGTGTGCTGAAGCCCGGTGGACAGTCAGGCTGGTTACTCTGCAGTCCTGAAGTGAGGACAGGGACACAGGCTCAGCTGTGCAAGGTGTAAAAGCATCATTCCTGCAGTAGTCCATTTGCCTGGCCTCCCTGTGCTCAGCCAAGACACCCAACCCCAGGGAAGGGTGGAGAGGGGAAGGGCTAGCCTGTGGAGTAATCGCCTCCCTTACCTTACAAGTCATCCGATAGGACACTCGCTTCAGCACTTCTCAGCAGAGAACACAGTGAAAGCCACGCTGGCCGGGGCTCTGCACAGAGCCTAGAGCCAGACCAGGGGGTGGGGTGAGGGGAATGGAACTGGAAAGATGAGAATCCAGGACACGCATTCCACCAAAACACTTCATTGCCATATTGGACCAGTTTTATTTTTATGCTGTCCCCTGTTTCATTTTTTCCTGACCCCAAGATGCTCCCGGCAAAACCTGGCTCCTAGGAAACCCCCCAACACAGTAGTCCCAGGTAAAAGCACTTTTATCGTTATCGTTGTTGCTTTTGTTCATTAAGGAAACGGGCTGTAGACAGAGCCTCAGAGAGAGTAGCTAGAAAGCCCAGGCCAGCTCCCGGCTCTGCCCTGATTGTTAAGTACAGTGTAGCCTGACTGCTTGCTTCCAAGCTATAATGCTTGCATTTGCTGGCCTCCCCTTCCCTGTGGCTGTAGGGATCTGAGGGCTGCTGCCTTGCTGGCACTAGAGATCCCTGACCAGAAAACATTCCAGACACTTCATTTGTGGTAAGAAGCATCAATCTTCAAACATGTCTTCCAATGCCAAGATCTGGGAGCCACCATCCAGGTGAAAGGCCCAAACAGGAAGTCCCACCCCAAGTTGAGAAGTCCCACCCCTGTTGGGTTGTTTGTTTGTTTATTTGTTGTATTAATAACCATCCCTCCATAATTTTAGCTCACCTGCCTCTCAGAGAGATTAGGTTCTAGTAAAATCTGATCCCAAGTCTACTAAGTGAGCTAGACAGAGGATTTTTAGCTTCCTGTATATATCGGGATCATGGAATATTCAAGTCATTAAATTAATAGTCCCCTGGTCTAAGAACATATTGCAGGATGAGGGGTCTCTAACTGGGGCTGCAGGAGATCCAGTTAATCAGAGGGCCACAAGAAAGCCCAGGTCCCCTCTGAAAGGCACTCCAGGAAGAGGAGGCTGGGAGCCCTTGGGTCAGTCCTCACCCTGTGCCTCAGTCTCTGTCCTGGAACATGGGAAGTGTCTCCATGAAGACAGGTATCGCTTGCCCTCTCCATGTGCTGGAGCCTAGCAGCCCAGCCCTGGCTTGCCTGCTTCAGGAGCCAGCCTGGCCTGGAATGGTTTGCAGCAGGACATAGCATCGGACAGAGAGGTAGCTTTGTCTGATGTCCATAGATGACCTCTGGCCTTCTAGCTCTCTAACTATACTGAATGCTTGCTGATAATTTAAAAAAATCCTAAAGTCATTATTGCCTATTCTATGTTAAAACCACTGGCTTGGGTGACTAACATGTGTTGCCTAGCAGTGGGGAATTCAGTACAAACTTATGGCTATCACCCCTTTCTCTGTCCAGGCAGCCAGAAGCCTCTCTAGCTAGAATGGTTAACTCTTTGTGAACCATAAAGGAAGGAAAGGAAGAGAATTAAGATGCTTTATACAGGCAGATATGCCCAGACACCTAGACATCCATACACACATTCACGTTTTCATTACATATTAACACATTCACAGTTTTCAACAACGTGTCTCATATAATCCACAAGTATTCATGCATGCTTACATACATACAAATATACCCACACATGTATGTACAGACAAATACATTTGGATGGACGGGACAGAGACCCCATAGCCAAAACATCCAACCGACAGTTTTATTTCTTTTCGCTGGCCTTTTTTTTTTTTTTTTTTTCCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCTCGCTGGCCTTTTAATACACTCATAGACAAAAAGTTCTTTAGAAAATTACCTCAGAGATAAAATGTTACATAAAATGGGAGTTACAGAAGAATGTTGATGTTGAGTTCAAAGAACTATCTCATTCTGTCTGCTCAAAACAAGAGATTTTACGTGGCCTTGCCGTACCGTAGTGCACACCGTGACTATATCCTTAGACCTAAACGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTCCTTTTTTCAGAGCTGGGGACCAAACACAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAACTAAATCCCCAACCCCAGACCTAAACATTTTTCCTTGAACACAGATTTGTCCCGAGCCCATTTCTTTTCTTTTAAGTGTAGTTATGAACGCTCATTGTATTTCTAACTATGCAGCCTTTGCTTACTATTATGAGGAGTGGGCACATTCTATTCTTGATTCTAACTTTATTACCTCTTCCTAGCCAAGCCACTAAGACCATCTCTAAAACACTTTCTTCCTAAAATTATTTGAATCAATTAGGAATTCTATGGGATCATTAATTCACCTAGACAGCATTAATTCGTCAAAGTCCATCTTTATGTTGATCTGCAGGGAATCTGATCAATAGGGTGGGCCCAGAGCTAGTATATTAATTTAATAATGGCAGGAAAGGCATATCAGCTGCAAGAAGCAATCCTGAGATGAAGTCTTTTTGGAACCTTACCATTGAGCTCACCCATCACAGACCATGCAAAAATGATGGCCACCTCCAGGAAGCCCACCTGCTAGCCTTAACCTATCCTTGATGGCTCCTGACAGGCATCTTCTACACCAGCCCACTCCACTCAAGCAAAGCACTGTACCAAAGCCTGCAGCCGAGTCCTTGGTGTTTGACGCTGCTGACCCTACAGAAGCCCAGGCTTCTTGCTGTCCATTCCTTTCCCGCCCTGTCTATGCGGTGGCCTCTACCCTTGTGACTCCCCCTTCACTCCATCCCCTGCACAGAGAGCTCTTCCTGCCCAGGGATGTAGAAAACATGCTGCTTCCCCTCACCTGGATGGTCCCGGCTCAGCATGCCCTCCTGAGAGAAGCCTTCATCTTCCTGTCTCCAGACCACCCCAGGCAGAATGTGACTGCCTGTCTCCTCTCTCTACCTGCTCACTTCCTACAGATTATTTCTCCTCTTCCTCTCCCTGTCTCTCCCTCTCTTCCTCCTTCCCTTATCTCTTTCCGTTTTGCCTTTATTTTAATTCAAGATCTTCCTGCCTCTGCTCCCAGCGTGTTGGAGTTATGGATGTGCACTGCCATGCCTGCCTGGCCTCCCTGCTGATATTTGCTCTGTCCTGTTGCAG
Seq C2 exon
TTTCCTTAAAGACGCCTAAGCCGCTGTTCCGGGATTGTGCAGAGATCAAGCGCTCTGGAGCCAACACCAGTGGTGTCTATACCATCCATGGGGCCAACATGACAAAGCCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008:ENSRNOT00000006786:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]