HsaINT0007986 @ hg19
Intron Retention
Gene
ENSG00000101280 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:487]
Coordinates
chr20:861814-865968:-
Coord C1 exon
chr20:865721-865968
Coord A exon
chr20:861930-865720
Coord C2 exon
chr20:861814-861929
Length
3791 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTTGTGTTGTCCCTTTGCAGCCT
3' ss Score
10.79
Exon sequences
Seq C1 exon
CGCGCTCGAGAAGCGGTTGCAGGCCCTGGAGACCAAGCAGCAGGAGGAGCTGGCCAGCATCCTCAGCAAGAAGGCGAAGCTGCTGAACACGCTGAGCCGCCAGAGCGCCGCCCTCACCAACATCGAGCGCGGCCTGCGCGGTGTCAGGCACAACTCCAGCCTCCTGCAGGACCAGCAGCACAGCCTGCGCCAGCTGCTGGTGTTGTTGCGGCACCTGGTGCAAGAAAGGGCTAACGCCTCGGCCCCGG
Seq A exon
GTGAGTGAGCGGTGTGCGCCCCAGTGTGGCTAAAGACGGGCAGGAGAGGGGAGGGGAGACCCTGCTCACCCTCCAGGGTCTCTGGGCGCCTGGGAGCCATTGCGGGCCCCACCCTCCCCGACCATCTGTGAAATAGAAACAACAATAAACAGTAATAATGGCGTCAACAACAATCCCAATCCAGGCCCTGTCCCCTGATTCCATGGGTGACCTTGGGCATGCCCCTGCCCCTCTCTTGGCCTCAGTTTACCCATGGGTTTTGGAGGCGAGGATGAGGGCAACAGCAATCCAGACTGACAAGTTTGGTCTCCAGGATTCATTCTCCAGCCCCACTTTCTTGGGCTTGTCCTACCCCTCCCTGGGCCTCAGTTTTCCTGGCTGTAGAATGGGAGGAACTGGGAGGTTAGACTCAATGCACCCCAAGGACCTCTCTCATCTTAATGCCCCTGCCCCTAAGCCCAAGAGGGCCAAACAGAAGTGAAGAGGCATCCCTGGCCCTGGCTTCTGGGTCAAGAAAACAATTCTGGGCTGGGCTCCCAGGCTCTCACTGACTCCTTCTAACACGGCCTACTTGGGGTGTCCAAGGCATTCTTGGCCCCAGCTGCAATCACTCAGTCAACAAACATTTACTAAGCACTTACTGTGTGGCAGGCCCAGTGCTGGGTGCTGGGGATACAGCAGTGAATGCACAGTCACAGCTCCTGTCTCTTGCAAAAATGTCCAGTCCCTGGTTTACGGGTCCCAAAGGGAAGGAGAAAGAAATACATGGTTTTTGAGTGCATAATATGTGCCAGATGCTCAGCTATCAGTGTTCCTGAAGTTTCCAGACCATAAAAATAGACAGGTCCAAAGGCTGTGCGAAGGAGAAGGGCTCTTAGCCTGAGGCTAGCAGGGGGCATGGGAGGCTTTTGAACAGAGTGGGACTACTTTCAAGAAGCTCTGACTGGAACCATGAGTGGAGATGTCCTGATGAGAGAGAAAGACCAAAGGGGCTACTGCTGCTCCTGGATCCATAGTGGAAGGCTGGAAAGCCTTTAAGACCCAATAGTGATGGCGCTCCCGGCACCACCAGGGCTGACAGGGATTTGAGGGCAGAAGATTCCACCCTGGCTCCATCTCAGTCTGGCAGACCCAGCTGAGTAGGGGTTTGAGGCCTAAGGAAGCTACAGGTAGGAAAAGTAGACACCTTCCAAATCGCGACATGTGGATTAACCTGAACCTATTACTGGCGTATGCACAGACCTGGCCTTGAGCTGCCTGAATTCATCCCATGTGTGGGTTTCTTGTAGCTCAGCCCAAGGCACAGGGCCTGGGCCCAATGCCTCCCACTAACCCACTGGTAACCCAGTCCCCAGATGAGGCTGAATGTCTGCTCAATCGTCTGAGTAGGAGGTTGTGTTGGGCACCTCACCTTGGGCACCTTTTGCCCAAACACCCTGTCCCCCGTGCTCCACTATCACCAGGGAAGGACACTAGGCAGTTGCTTTCACCCCCTTCTGGATGGAGAAACTGAAGGAGAGGCTCAGTCACCAGGTGTAGAAGAGAGGGCTGGATGGAGATGGGGCACAGGAACCAGGCATCCTTGAAGTCTAGCAGGAAGGGAGCACTAGCTCTCTGCATGGCTTTGTCCCAGTCAGGTGGAGGCTAGTGAAAGGAGAAGAGAGTCAAGTCTTCTGATGTTCCCAGGCACTGGGGAGTTTGGTTCAGAAGGTTACAAGGACATGGGCACAGGCAGAAAAGACCAAACTTGTGCATGATATAAAAGCAGCGATTGTTCATGCAGGCTGTTTGCCCAACCTTACATATGCTCAGTGGTGGAAATCCAAAGGAAGATGTGTAGGAGGAAGGGCACTGGCTTTGCAGTCAGATGGGCCGGAGTTCAAGCCCTGGCTCCTTCACTTATTAATTAGCACTGGAACTTCATACAAGTCATTTATTTAACTTCTCAGAGCCTCAATTTTTCTTACTTGTAAAACGGGAATAATAATCTCATAGAGTTCTTGCACAGAGAATCGGATGAGTTCATGCATACAAAAGGGTTCAGCACAGTGCCTATGCACAAAAGCGAGGGAAACTGGTACAAATTACCAGCCCAGATATTCAGAGGAGGACCAGATCAAACTGTTGCATATCAATATCAGTCCATCCTATTCTTATGCCTCCCAAAAATATTTTTCCTGGCCCCAAACTACCCCTGGCATTACATGACACCTTGGAAACACTACAATACATGGTGAGTATTTCACTTTTTGTGTTGATATTATTGTTGTTATTGTTATTGATATTGTTGTAGACTAAGGAAAATAACAGTGAGCAGAGCCTTGGAAAGGGTGGCTGGAAATCTCAGGCCAACCCTGGCTCTGTCCTTGCCTTACTGGGTGAGGTTCAGCCCATCCCTGCTCACCTTGAGGCCAACAGCCTCCTCATGCTTGGCTGGACTCCAATTCCCTGTGGGGAGCTGAGGGGGTGCCAACAGGTGGGGCAGGGGTCTCCACTGCCCAGGAAATGCTTGTGAGTGAACTGGAATTGATTTGGGGGTCTTAGTCATCTCATTTGTGACATGAGAGCAATAGCCTTCTCTGGACAAGTGCCCCAGATCCAGGATCTGGGATCCCTGAAGTTCAGATGTAAAGCCAAACCAGGAAGTCCCACCCTGTGGTAGCCTCCTGGTTCCTCACTGGTGTTGACAACCTATCCATCTGGAATTTTAGCCCCATCCTGGGTACCTGGCTACCCAGAGAGATTGGATTCTGGTAGAATCATAGTTCAAACCTCTAACTGGATTCCACTAATTGAGACAGAGGAGATTTTAAATCTCTGCACTTTGTTTGTCAACAGTCACTTTTTCCAGGCCAGGCCTAGAAACCCCTGGTAGGTTTTAGTCATTAATACTATCCCGATCTCATGTAGTCCAGAGGGAAGAAACAGGGGCCCTTTAAGGCCAGCAGTCAGCTTCAAGGGAGGACAGAATAAGGGAGCATATGCCCAGGGCAGCAGGGAGATACAGCCAAAAGGGTGGGCTATGAAGGGGAGCCCACAGCTTCCCACCCAAGGGAGCTCCAAAGAAGGAAGGTTCTGCCTTACCTGGCTGTGTGCCCTTGGGCCAGTTGCCTCACTCTTGGGCCTCAGTTTCCTGGTCTGTGAAATGGGAAGTGCCTCACTGGAGTTCAGGCCCCAGTAACTCTCTCCCAGAAAACTCTAGCAGCCTCCTCTCTGGCCTCCCAGCTTTGAGTCTCATCCCCTCCAGGCCCCCCTCCACACTCTGGACAGAGTGCTCTTTCTCAGCCCAGAGAATCTGGGCTCCGCAGCCTGGCACTCACGGCTGACTTGGCCCTGCTGAAATCTCAGCTTCGTCTCTCCTTTTCCTTCCCCACCTTCTCTGTGCCAGCCTTGTTCTACCCTCTCAGTTGCATCATACAGCAAGCAGCCTCCCTGGTCTCAACTCCTCTCTCACGGTGTGAGTCATTTCCTCTCCTTGGCCTCAGCCTTAGTTCCCCTCCCCATGCCCTGTCCTCTGCACACACTAGGGCCCTTCCTACCTTGGGGCCTTTGCATATGCTGTTTCTTCCGCCTGGAACACCTTCCCCTTCTCCACTGGGCAACTCCTGCTCATTACACAGGTTCCAGCTTACTGTCACCTCCTCTACGAAATCTTCCCAGGTCTGACTCATCTCCCTGTCCCCAGCACCTCCCAACCCAGAACCTGGCACAAAGCAGGCAGGCATGCCCACTTGGCCCCTTCTCTCTTTCCTTGCCCACCTCCAACTGACTTTTGTGTTGTCCCTTTGCAG
Seq C2 exon
CCTTCATAATGGCAGGTGAGCAGGTGTTCCAGGACTGTGCAGAGATCCAGCGCTCTGGGGCCAGTGCCAGTGGTGTCTACACCATCCAGGTGTCCAATGCAACGAAGCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101280-ANGPT4:NM_015985:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)