GgaINT1007661 @ galGal4
Intron Retention
Gene
ENSGALG00000004622 | C17H9ORF114
Description
uncharacterized protein LOC417203 [Source:RefSeq peptide;Acc:NP_001264604]
Coordinates
chr17:5280335-5281207:-
Coord C1 exon
chr17:5281109-5281207
Coord A exon
chr17:5280438-5281108
Coord C2 exon
chr17:5280335-5280437
Length
671 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
ATTCTGTGTTTGTTTGCCAGGCG
3' ss Score
8.38
Exon sequences
Seq C1 exon
AAACTAAAGTACGAAAAGGCACTGTGGTGTCTTCGCACCACCCTCGCACGGTGTCCGGTTTGTACTGGGGTTACAGCGTCCGCCTTGCCTCCTGCCTGA
Seq A exon
GTAAGTACCCAGAGGGGTTCTTTGCTTTTTACTGTGTGGAACGATCTTAATCCCAACTTGGGCTTCCACACCAATCTCAGGCCTACTGGGTACACTTCTGCTGCTTAAAATTCTCATTTTGTCTCAAAATGGGTGACCGCCAGCCAGTGATGCAGCTAGCAGTCATGCTGCTCAAATCTGAGTGCTCAAACTACAAGTGTTGAGTTGCCCCATTCATCCTCCAGTACTCTGCCCTCTACCTCCACATTACCACAGCTCTAAACATCCGTGTTGTGGCAACACAGACAAGAGTTGGTTATCTCCATCTCCATTTCTGTGATAACTACCTCCCACTTGTCCACATCAAAGCCCACGGAGACATCAGAGCTCAAAAGCCCTGCAAAATTCTTTCCCACTGTCTTCTGATAGAAGAAAAATCATAAGCCATTCATCAAGGAATGGTTCTTGGTACCTGCTGAGCTTTGAGGTGCTGCAGTTGAGTGCCAGGAGACTTCTGCAGCAATGGAATTAAGTAGGGAAAGGGATAATTCTTCATTTAGAAGGTGCATTAGTGGCACTGGGAAGCAATCACTTCTGCTGCTACCACTCACCTTTGAAGCGTCTGGACTGCCCAGAAGGCAGCATGGGTGAGAGCACCACTATGATAACCACATTCTGTGTTTGTTTGCCAG
Seq C2 exon
GCGCTGTCTTTTCAGAATGTCCGTTTAAGGAAGGCTATGATGTCTCTATTGGGACCTCAGAGCGGGGTAACTCCGTGGACCAGGTCACCCTCCCCTCCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622:ENSGALT00000007359:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGTACGAAAAGGCACTGTGGT
R:
CTAAAGGAGGGGAGGGTGAC
Band lengths:
198-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]