RnoINT0142837 @ rn6
Intron Retention
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8745654-8746337:-
Coord C1 exon
chr3:8746239-8746337
Coord A exon
chr3:8745757-8746238
Coord C2 exon
chr3:8745654-8745756
Length
482 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
CTGAGTCTGCCCACCCCCAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
AATGCAAGACGTACAAAGGAACAGTCGTGTCGTCACAGGACCCCCGCACCAAAGCTGGTCTCTACTGGGGCTACACTGTCCGGCTGGCCTCCTGCCTCA
Seq A exon
GTAAGAACTGACGTCCCTCCCCAAGTGTCCATCTGTCCCACTTGTGAGACCCACAGATCAGGGTCTCTGTCCTACCAAGATGTGTGTGTAGGTGAAGCCTCCTCTAGTCTCTGGTCTCATCTCTGGTACCCCAGTCTCCCCGAACATCTCTGTGAATGCTAAGAACATCTGAGAACAGGAGGTGCTTGGCCCCTATCCTGCTGCAATCTTAGCTCTAGCGAGGCCAGCACAGAAATCTCACTGTCATTTGAGACCAGCTTAGATACCTGAGAGCAAGACCTTGCTGACTTAAGTATCATGACTGCTAAACGTCGTCTGGGGCTTGGGAGCTTCTCCCTGCCTACCCCGAATGTTCCCCAGGCAAGGTCAGCGTCCCAAGAGCAGTGGATGCCTTCTTTACCTGACCTCTCCCTCCACCTGACCCTACACTGTACTAGACACACAGCCGAGAGCAAGACCCCACTGAGTCTGCCCACCCCCAG
Seq C2 exon
GTGCTGTGTTTGCCGAGGCTCCCTTCCAGGATGGGTATGACCTGACCATTGGGACATCAGAACGTGGCTCCAGCGTGGCCTCTACCCAGCTGCCCAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711:ENSRNOT00000030623:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGACGTACAAAGGAACAGT
R:
GAAGTTGGGCAGCTGGGTAGA
Band lengths:
198-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]