HsaINT0025316 @ hg38
Intron Retention
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128824072-128824869:-
Coord C1 exon
chr9:128824771-128824869
Coord A exon
chr9:128824175-128824770
Coord C2 exon
chr9:128824072-128824174
Length
596 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
3' ss Seq
TGAGCTGGCCCCACCCCCAGGTG
3' ss Score
7.85
Exon sequences
Seq C1 exon
ACTGCAAGACCTACCATGGCAAAGTGGTATCATCGCAGGACCCTCGCACCAAAGCTGGTCTCTACTGGGGCTACACCGTCCGACTGGCTTCCTGCCTCA
Seq A exon
GTAAGGACAGACCTTACTTCTCTGAATATCCATCCATCCCTCTGGGAGGTGGCCGGGAGCCTTGCCTGACCCAAATATCAGACCAGGGTTTTTGTCCTGTCAACTTGCTGTGTGTCCTTGGGCAAGTCCTTCCCCTTCTCTGGGCCTTGTTCTCCCTGGATGCACTGCCTGGAATGCTGTTAAGGACTACTGAGCAAAAGTATCATTATTGATCAATAATGTTTCTGTAGGGTTGGGAATGGAGGCAAAAGGGCCAGAGAAGTCAGAGGCCCACTTCATGTTCTTGGTGCCTCTTCCTATCCAGTCTCTGCCCTGTTCCCCAGCCAAGCACAGGCTTGGTGTCTGCCCTGCTCAGTCCTTGACTTTCCAGGAACAGCTCTACCCACCCCTGCTCGGTACACACACACCCCTGCCTCAATGCACACACAGGCAGAGCTCTACCCACCCACCCCTACCTTAGTACACACACGCACACACACACACACACACACCACACAGCTCTTCCCACCCACCCCCGCCTCAGTACACACACACATAATACCCGGAGCTATGGCTTGTGGGGAGCAGGACCTGCACTGAGCTGGCCCCACCCCCAG
Seq C2 exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAAGATGGGTATGACCTGACCATCGGGACGTCAGAGCGCGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917:ENST00000361256:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PU(24.6=94.4)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGACCTACCATGGCAA
R:
GAAGTTGGGAAGCTGGGCAG
Band lengths:
199-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development