GgaINT1007662 @ galGal4
Intron Retention
Gene
ENSGALG00000026576 | C17H9ORF7
Description
calcium channel flower homolog [Source:RefSeq peptide;Acc:NP_001264586]
Coordinates
chr17:6930895-6931454:+
Coord C1 exon
chr17:6930895-6930967
Coord A exon
chr17:6930968-6931328
Coord C2 exon
chr17:6931329-6931454
Length
361 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTCACGTGCTCTCCCCGGAGGCT
3' ss Score
1.53
Exon sequences
Seq C1 exon
CTTGTGCTGTTGCTGGTCTCTGGAACTGTGTTACCATCAACCCACTGAACATAGCAGCCGGAGTGTGGATGAT
Seq A exon
GTAAGTGGAGTTCCTGTTCCTTGTTTGCACTGGGAGGGAGGTTCTGTCCATGGGGCTGTGCGAAGTGAGGCACGGGGTGCTGCAGTGAAATGCACTGTCTGTGTATCTCTGGGTCTTACCTGACCAGCTGGGTGGAGACACGGGGTCTGTTTTATTCACAGCCCTCTCTACTCCCTACCCCCTTCCCCCCCCTTTTGCGGCTGGGATCCGGGGTCAATGTTTGGGAATTATCAAGAATGGGAGAAAACAAAGCATGTTCCAGCCCTGCCACGTGCTTCTGCCTGCTCTGAAGCATCGGTGGGGCTGGGAGATGGCTGACCCCGCTCCGGGCAGTGCTAACTCTCACGTGCTCTCCCCGGAG
Seq C2 exon
GCTCAACGCCTTCGTCCTGTTCCTGTGCGAGGCTCCGTTCTGCTGCCAGTTCATCGAGTTCGCCAACGCCGTGTCTGCGAGGGCAGACAAGCTGCGGGCCTGGCAGAAAGCTGCTTTCTACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026576:ENSGALT00000042742:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(21.8=100)
A:
NA
C2:
PF102334=Cg6151-P=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTGTTGCTGGTCTCTG
R:
CCGCAGTAGAAAGCAGCTTT
Band lengths:
198-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]