GgaEX1011725 @ galGal4
Exon Skipping
Gene
ENSGALG00000026576 | C17H9ORF7
Description
calcium channel flower homolog [Source:RefSeq peptide;Acc:NP_001264586]
Coordinates
chr17:6926862-6933084:+
Coord C1 exon
chr17:6926862-6927237
Coord A exon
chr17:6931329-6931454
Coord C2 exon
chr17:6932072-6933084
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTCACGTGCTCTCCCCGGAGGCT
3' ss Score
1.53
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GACGTGGAGGCTGCTCCCACGGCCGCTGGCATCGCTGCTGCGGTCAGAAACCCTCTATTGTCAGCCCTGGGGGGCCCGGCCCCGTATGGGGGTGCGAGGAGAGGCCCAGCAGCAGCAGGGCCGGGTTAGGGGCCGTCTCCTGGTCCTGCTGGAGGAGGGGGAAGTGTCACCTGGAGGGGCATCCAGCGCTGCTGGGGCTCAGGTGGGAAGCGGGGAGCTGCCCTTTGACCCCCCAGCAGCAGCAGCGGGGCCATGAGCTCTCAGGATGAGCAGTTCCAAGCAGCAGCCCCCGAGTCAGCATCTTCCTCCGCCGATGATGGCATGACCTGGTGGTACAGGTGGCTCTGCAGGATTGCCGGGGTCATCGGGGGCGTGT
Seq A exon
GCTCAACGCCTTCGTCCTGTTCCTGTGCGAGGCTCCGTTCTGCTGCCAGTTCATCGAGTTCGCCAACGCCGTGTCTGCGAGGGCAGACAAGCTGCGGGCCTGGCAGAAAGCTGCTTTCTACTGCGG
Seq C2 exon
GGGAGATGCCATTTCCTACGCTCGGATCCACCAGCAGCAGAAGCAAATGGATGAAGAGAAGCTCACGGGGTGCCTGGAGGGACAGGCTCTGTGAAGTGCGTGAGCCCAGGGTGACCTTTTGGACCCTGAGATGGTGGTGAAGATTTGGAAACCCACTCTGCCCTCCCCTCTGCTCAACCCCTCTCCATCACTCCACGATTTCCCTGGACACTACAGCAACAACTGGAGCTCTCAGGGCCGGGGTGGGCTGTGCCCCCCTCACACACCAGCAGTTGGACCTCAGTGCTTTGGCTGCTCCCTCCTCCTGCCCACTCAGAACCAAATATCTCATGGTCCTTCTTTTTCTTTCTTTCTTCCTTTCTTTTTTTTCTTCTTTTTTTATGGCAGGGGTGCTGGCCCTTTGAGTGCTGCTGTATAAGCCTAAACACGTAGCCTTTCTCTGGTTTTGATGCCCATCACATTTTGCTGGGAACTGTGTGTGGGCAGCACACTCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026576_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=16.7)
A:
PF102334=Cg6151-P=FE(38.2=100)
C2:
PF102334=Cg6151-P=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGCATGACCTGGTGG
R:
GGAGTGATGGAGAGGGGTTGA
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]