DreEX6083033 @ danRer10
Exon Skipping
Gene
ENSDARG00000090818 | CACFD1
Description
calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
Coordinates
chr21:5842400-5845933:-
Coord C1 exon
chr21:5845861-5845933
Coord A exon
chr21:5845640-5845765
Coord C2 exon
chr21:5842400-5842507
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTTTGTCCTTTAGGTT
3' ss Score
12.22
5' ss Seq
CGGGTCAGA
5' ss Score
4.2
Exon sequences
Seq C1 exon
CATGTGCAACAATGGGCGTTTGGAACTGTGTTACTGTGCATCCGCTGAACATAGCTGCTGGAGTTTGGATGGT
Seq A exon
GTTGACAGCGTTTGTGCTGTTTCTGTGTGAGGTGCCGTTCTGCTGTCAGTTTGTGGAGTTTGCTAATGCAGTGGCGGCGCGTGCAGATCGACTGAAGCCCTGGCAGAAAGCACTCTTCTACTGCGG
Seq C2 exon
GATGGCGCTGTTTCCCGTCTTTCTGAGCTTCTCTATCACAACTTTGGTTGGTAACGCTATTGCCTTTGCTACAGGAGTTCTGTACGGACTTGCGTCTCTTGGAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090818-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(21.8=100)
A:
PF102334=Cg6151-P=FE(38.2=100)
C2:
PF102334=Cg6151-P=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCAACAATGGGCGTTTG
R:
TTCTTTCCAAGAGACGCAAGT
Band lengths:
180-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]