MmuEX0002092 @ mm10
Exon Skipping
Gene
ENSMUSG00000015488 | Cacfd1
Description
calcium channel flower domain containing 1 [Source:MGI Symbol;Acc:MGI:1924317]
Coordinates
chr2:27014093-27018480:+
Coord C1 exon
chr2:27014093-27014165
Coord A exon
chr2:27015484-27015609
Coord C2 exon
chr2:27018373-27018480
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCTTTGACCCTGCAGCAT
3' ss Score
9.26
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
CCTGTGCCATCTCTGGACTCTTCAACTGCGTCACTATCCACCCTCTGAACATCGCAGCTGGCGTGTGGATGAT
Seq A exon
CATGAACGCCTTCATCCTGTTGTTGTGCGAGGCTCCCTTCTGCTGCCAGTTTGTGGAGTTTGCAAACACAGTAGCTGAGAAGGTTGACCGGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGG
Seq C2 exon
GATGGCCATCGTCCCCATCGTCATGAGCCTCACCCTGACTACACTGCTGGGCAATGCCATCGCCTTTGCCACGGGGGTGCTGTATGGACTGTCTGCCCTGGGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015488_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(35.3=96.0)
A:
PF102334=Cg6151-P=FE(52.5=100)
C2:
PF102334=Cg6151-P=FE(45.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCCATCTCTGGACTCT
R:
GGCAGACAGTCCATACAGCAC
Band lengths:
170-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types