HsaEX0011718 @ hg19
Exon Skipping
Gene
ENSG00000160325 | C9orf7
Description
calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:1365]
Coordinates
chr9:136328605-136333150:+
Coord C1 exon
chr9:136328605-136328677
Coord A exon
chr9:136330444-136330569
Coord C2 exon
chr9:136333043-136333150
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCCTGGTCCCTGCAGCAT
3' ss Score
9.19
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
CTTGCGCGATCTCTGGCCTCTTCAACTGCATCACCATCCACCCTCTGAACATTGCGGCCGGCGTGTGGATGAT
Seq A exon
CATGAATGCCTTCATCTTGTTGCTGTGTGAGGCGCCCTTCTGCTGCCAGTTCATCGAGTTTGCAAACACAGTGGCGGAGAAGGTGGACCGGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGG
Seq C2 exon
GATGGCGGTCGTTCCCATCGTCATCAGCCTGACCCTGACCACGCTGCTGGGCAACGCCATCGCCTTTGCTACGGGGGTGCTGTACGGACTCTCTGCTCTGGGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160325_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(70.6=100),PF102334=Cg6151-P=PU(7.5=12.0)
A:
PF102334=Cg6151-P=FE(38.2=100)
C2:
PF102334=Cg6151-P=PD(5.9=5.4),PF102334=Cg6151-P=FE(90.0=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCTCTGGCCTCTTCAAC
R:
CCCAGAGCAGAGAGTCCGTAC
Band lengths:
170-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)